Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC11.83□□□□□ -0.52
Chd3B1AR17 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC11.83□□□□□ -0.52
Chd3B1AR17 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Chd3B1AR17 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Chd3B1AR17 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Chd3B1AR17 Gm15595-201ENSMUST00000120840 961 ntBASIC11.83□□□□□ -0.52
Chd3B1AR17 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Chd3B1AR17 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC11.83□□□□□ -0.52
Chd3B1AR17 Gm6485-201ENSMUST00000160676 439 ntBASIC11.83□□□□□ -0.52
Chd3B1AR17 Gm9550-201ENSMUST00000161130 862 ntBASIC11.83□□□□□ -0.52
Chd3B1AR17 Gm9136-201ENSMUST00000193368 454 ntBASIC11.83□□□□□ -0.52
Chd3B1AR17 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC11.83□□□□□ -0.52
Chd3B1AR17 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Chd3B1AR17 Gm4157-201ENSMUST00000211647 679 ntBASIC11.83□□□□□ -0.52
Chd3B1AR17 AC121960.1-201ENSMUST00000227982 564 ntBASIC11.83□□□□□ -0.52
Chd3B1AR17 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Chd3B1AR17 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Chd3B1AR17 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Chd3B1AR17 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Chd3B1AR17 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Chd3B1AR17 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Chd3B1AR17 Gm14132-201ENSMUST00000117188 1719 ntBASIC11.83□□□□□ -0.52
Chd3B1AR17 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Chd3B1AR17 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Chd3B1AR17 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC11.82□□□□□ -0.52
Chd3B1AR17 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Chd3B1AR17 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC11.82□□□□□ -0.52
Chd3B1AR17 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC11.82□□□□□ -0.52
Chd3B1AR17 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC11.82□□□□□ -0.52
Chd3B1AR17 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC11.82□□□□□ -0.52
Chd3B1AR17 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Platr7-201ENSMUST00000181466 1334 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Chd3B1AR17 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Gm9796-201ENSMUST00000062249 2250 ntBASIC11.82□□□□□ -0.52
Chd3B1AR17 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Chd3B1AR17 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Chd3B1AR17 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC11.82□□□□□ -0.52
Chd3B1AR17 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Chd3B1AR17 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Chd3B1AR17 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Mir7677-201ENSMUST00000184226 67 ntBASIC11.82□□□□□ -0.52
Chd3B1AR17 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC11.82□□□□□ -0.52
Chd3B1AR17 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Chd3B1AR17 Gm38151-201ENSMUST00000195085 289 ntBASIC11.82□□□□□ -0.52
Chd3B1AR17 Gm43365-201ENSMUST00000196522 2106 ntBASIC11.82□□□□□ -0.52
Chd3B1AR17 Gm8956-201ENSMUST00000203939 825 ntBASIC11.82□□□□□ -0.52
Chd3B1AR17 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC11.82□□□□□ -0.52
Chd3B1AR17 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Chd3B1AR17 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Chd3B1AR17 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Chd3B1AR17 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Chd3B1AR17 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Chd3B1AR17 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Chd3B1AR17 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC11.81□□□□□ -0.52
Chd3B1AR17 Mccc1os-202ENSMUST00000137198 2686 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Chd3B1AR17 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC11.81□□□□□ -0.52
Chd3B1AR17 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC11.81□□□□□ -0.52
Chd3B1AR17 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Chd3B1AR17 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Chd3B1AR17 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC11.81□□□□□ -0.52
Chd3B1AR17 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Chd3B1AR17 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC11.81□□□□□ -0.52
Chd3B1AR17 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC11.81□□□□□ -0.52
Chd3B1AR17 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Chd3B1AR17 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Chd3B1AR17 Brwd1-204ENSMUST00000113829 9843 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Chd3B1AR17 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Chd3B1AR17 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Chd3B1AR17 Gm9072-201ENSMUST00000218390 1514 ntBASIC11.81□□□□□ -0.52
Chd3B1AR17 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Chd3B1AR17 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Chd3B1AR17 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Chd3B1AR17 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Chd3B1AR17 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC11.81□□□□□ -0.52
Chd3B1AR17 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC11.81□□□□□ -0.52
Chd3B1AR17 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC11.81□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms