Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 AC122371.3-201ENSMUST00000223402 1061 ntBASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ddx56Q9D0R4 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Orc5-201ENSMUST00000030872 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Gm14109-201ENSMUST00000118814 309 ntBASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Gm13376-201ENSMUST00000128743 448 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Gm27046-201ENSMUST00000182160 463 ntBASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 AC153929.1-201ENSMUST00000219009 303 ntBASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Rangap1-201ENSMUST00000052374 2954 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Apobec1-201ENSMUST00000112585 2127 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Gm1995-201ENSMUST00000220838 2602 ntBASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ddx56Q9D0R4 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx56Q9D0R4 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC12.72□□□□□ -0.37
Ddx56Q9D0R4 Gm30648-202ENSMUST00000200648 1957 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx56Q9D0R4 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx56Q9D0R4 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx56Q9D0R4 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx56Q9D0R4 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx56Q9D0R4 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx56Q9D0R4 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx56Q9D0R4 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx56Q9D0R4 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx56Q9D0R4 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx56Q9D0R4 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC12.72□□□□□ -0.37
Ddx56Q9D0R4 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx56Q9D0R4 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx56Q9D0R4 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC12.72□□□□□ -0.37
Ddx56Q9D0R4 Gm8862-201ENSMUST00000198379 1346 ntBASIC12.72□□□□□ -0.37
Ddx56Q9D0R4 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx56Q9D0R4 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx56Q9D0R4 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx56Q9D0R4 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx56Q9D0R4 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ddx56Q9D0R4 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms