Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Gm9136-201ENSMUST00000193368 454 ntBASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Crry-ps-201ENSMUST00000079090 1309 ntBASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Gm8155-201ENSMUST00000216363 1612 ntBASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Brf1Q8CFK2 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Gm13722-201ENSMUST00000117964 3066 ntBASIC14.57□□□□□ -0.08
Brf1Q8CFK2 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Gm26361-201ENSMUST00000158868 186 ntBASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Gm18893-201ENSMUST00000198416 943 ntBASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Gm9678-201ENSMUST00000198979 1149 ntBASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Gm44262-201ENSMUST00000204969 372 ntBASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Gm4607-201ENSMUST00000206649 577 ntBASIC14.57□□□□□ -0.08
Brf1Q8CFK2 CT571245.2-201ENSMUST00000218421 305 ntBASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Gm5455-201ENSMUST00000058710 715 ntBASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Gm44152-201ENSMUST00000205007 1691 ntBASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Gm9796-201ENSMUST00000062249 2250 ntBASIC14.57□□□□□ -0.08
Brf1Q8CFK2 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Brf1Q8CFK2 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Brf1Q8CFK2 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Brf1Q8CFK2 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Brf1Q8CFK2 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Brf1Q8CFK2 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Brf1Q8CFK2 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC14.56□□□□□ -0.08
Brf1Q8CFK2 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Brf1Q8CFK2 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Brf1Q8CFK2 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Brf1Q8CFK2 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Brf1Q8CFK2 Gm15172-201ENSMUST00000118945 1046 ntBASIC14.56□□□□□ -0.08
Brf1Q8CFK2 Gm12036-201ENSMUST00000120008 530 ntBASIC14.56□□□□□ -0.08
Brf1Q8CFK2 Gm15610-201ENSMUST00000120584 195 ntBASIC14.56□□□□□ -0.08
Brf1Q8CFK2 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC14.56□□□□□ -0.08
Brf1Q8CFK2 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC14.56□□□□□ -0.08
Brf1Q8CFK2 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Brf1Q8CFK2 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Brf1Q8CFK2 Gm43962-201ENSMUST00000203898 190 ntBASIC14.56□□□□□ -0.08
Brf1Q8CFK2 Aprt-ps-201ENSMUST00000212311 505 ntBASIC14.56□□□□□ -0.08
Brf1Q8CFK2 AC153929.1-201ENSMUST00000219009 303 ntBASIC14.56□□□□□ -0.08
Brf1Q8CFK2 AC159205.5-202ENSMUST00000224849 386 ntBASIC14.56□□□□□ -0.08
Brf1Q8CFK2 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Brf1Q8CFK2 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Brf1Q8CFK2 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms