Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ubp1Q811S7 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC12□□□□□ -0.49
Ubp1Q811S7 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Ubp1Q811S7 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Ubp1Q811S7 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC12□□□□□ -0.49
Ubp1Q811S7 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
Ubp1Q811S7 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Ubp1Q811S7 Gm37160-201ENSMUST00000193081 1689 ntBASIC12□□□□□ -0.49
Ubp1Q811S7 Prrc2b-202ENSMUST00000069817 10671 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Ubp1Q811S7 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC12□□□□□ -0.49
Ubp1Q811S7 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC12□□□□□ -0.49
Ubp1Q811S7 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Dmrtc1b-202ENSMUST00000113609 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Gm12715-201ENSMUST00000121430 1128 ntBASIC11.99□□□□□ -0.49
Ubp1Q811S7 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC11.99□□□□□ -0.49
Ubp1Q811S7 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Tmem150cos-201ENSMUST00000143245 1216 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Gm44967-201ENSMUST00000207047 631 ntBASIC11.99□□□□□ -0.49
Ubp1Q811S7 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Ubp1Q811S7 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Gm9361-201ENSMUST00000198695 1507 ntBASIC11.99□□□□□ -0.49
Ubp1Q811S7 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Ubp1Q811S7 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Gm37513-201ENSMUST00000194830 2268 ntBASIC11.99□□□□□ -0.49
Ubp1Q811S7 Gm38378-201ENSMUST00000195153 2268 ntBASIC11.99□□□□□ -0.49
Ubp1Q811S7 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ubp1Q811S7 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Tat-201ENSMUST00000001720 2375 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Gm10782-202ENSMUST00000223775 1480 ntBASIC11.98□□□□□ -0.49
Ubp1Q811S7 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Gm25668-201ENSMUST00000157700 129 ntBASIC11.98□□□□□ -0.49
Ubp1Q811S7 Gm26083-201ENSMUST00000157904 193 ntBASIC11.98□□□□□ -0.49
Ubp1Q811S7 Gm8885-201ENSMUST00000189382 598 ntBASIC11.98□□□□□ -0.49
Ubp1Q811S7 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC11.98□□□□□ -0.49
Ubp1Q811S7 AC163667.3-201ENSMUST00000225774 222 ntBASIC11.98□□□□□ -0.49
Ubp1Q811S7 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubp1Q811S7 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 64.1 ms