Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 CT573086.2-201ENSMUST00000227277 4992 ntBASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Gm44207-201ENSMUST00000204568 1424 ntBASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 AC123857.2-201ENSMUST00000225756 1582 ntBASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Gm25700-201ENSMUST00000177693 110 ntBASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Upf3bQ3ULL6 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Upf3bQ3ULL6 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Upf3bQ3ULL6 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Upf3bQ3ULL6 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Upf3bQ3ULL6 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Upf3bQ3ULL6 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Upf3bQ3ULL6 Armcx2-203ENSMUST00000119010 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Upf3bQ3ULL6 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Upf3bQ3ULL6 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Upf3bQ3ULL6 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
Upf3bQ3ULL6 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Upf3bQ3ULL6 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Upf3bQ3ULL6 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Tbc1d1-204ENSMUST00000121370 5419 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Gm43447-201ENSMUST00000198471 1535 ntBASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Gm13296-201ENSMUST00000117854 997 ntBASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Gm7722-201ENSMUST00000120646 741 ntBASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Gm14247-201ENSMUST00000120950 237 ntBASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Gm8856-201ENSMUST00000185254 1144 ntBASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Upf3bQ3ULL6 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Gm1995-201ENSMUST00000220838 2602 ntBASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 AC157950.1-201ENSMUST00000217561 2168 ntBASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms