Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
Limch1Q3UH68 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Limch1Q3UH68 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Limch1Q3UH68 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Limch1Q3UH68 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Limch1Q3UH68 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Limch1Q3UH68 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.13
Limch1Q3UH68 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Gm44806-201ENSMUST00000205574 2303 ntBASIC14.26□□□□□ -0.13
Limch1Q3UH68 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Gm13142-201ENSMUST00000117213 1453 ntBASIC14.26□□□□□ -0.13
Limch1Q3UH68 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Gm12217-201ENSMUST00000118858 696 ntBASIC14.26□□□□□ -0.13
Limch1Q3UH68 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Gm26361-201ENSMUST00000158868 186 ntBASIC14.26□□□□□ -0.13
Limch1Q3UH68 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC14.26□□□□□ -0.13
Limch1Q3UH68 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Limch1Q3UH68 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Limch1Q3UH68 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Gm25043-201ENSMUST00000158604 212 ntBASIC14.25□□□□□ -0.13
Limch1Q3UH68 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Gm8712-201ENSMUST00000221090 701 ntBASIC14.25□□□□□ -0.13
Limch1Q3UH68 AC113031.8-201ENSMUST00000227856 631 ntBASIC14.25□□□□□ -0.13
Limch1Q3UH68 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Limch1Q3UH68 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC14.25□□□□□ -0.13
Limch1Q3UH68 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Gm37513-201ENSMUST00000194830 2268 ntBASIC14.25□□□□□ -0.13
Limch1Q3UH68 Gm38378-201ENSMUST00000195153 2268 ntBASIC14.25□□□□□ -0.13
Limch1Q3UH68 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Limch1Q3UH68 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Limch1Q3UH68 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Limch1Q3UH68 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Limch1Q3UH68 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Limch1Q3UH68 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Limch1Q3UH68 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Limch1Q3UH68 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Limch1Q3UH68 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Limch1Q3UH68 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Limch1Q3UH68 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Limch1Q3UH68 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Limch1Q3UH68 AC130671.2-201ENSMUST00000227224 1621 ntBASIC14.24□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 48.3 ms