Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cux1P53564 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Cux1P53564 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC18.32■□□□□ 0.52
Cux1P53564 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Cux1P53564 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC18.32■□□□□ 0.52
Cux1P53564 Gm13530-201ENSMUST00000134014 390 ntTSL 2 BASIC18.32■□□□□ 0.52
Cux1P53564 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Cux1P53564 AC238811.4-201ENSMUST00000178019 1246 ntBASIC18.32■□□□□ 0.52
Cux1P53564 AC238940.3-201ENSMUST00000178830 1246 ntBASIC18.32■□□□□ 0.52
Cux1P53564 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Cux1P53564 Tex29-205ENSMUST00000209692 884 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Cux1P53564 Rpl3l-201ENSMUST00000045186 1033 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Cux1P53564 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cux1P53564 Gm44292-201ENSMUST00000205194 2364 ntBASIC18.32■□□□□ 0.52
Cux1P53564 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Cux1P53564 Gm37391-201ENSMUST00000194891 2318 ntBASIC18.32■□□□□ 0.52
Cux1P53564 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cux1P53564 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Cux1P53564 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cux1P53564 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cux1P53564 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cux1P53564 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
Cux1P53564 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cux1P53564 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cux1P53564 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cux1P53564 Capzb-201ENSMUST00000030518 1390 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Cux1P53564 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Cux1P53564 Zc3hc1-201ENSMUST00000080812 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cux1P53564 Gm13047-201ENSMUST00000117116 815 ntBASIC18.31■□□□□ 0.52
Cux1P53564 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC18.31■□□□□ 0.52
Cux1P53564 Gm12406-201ENSMUST00000155382 697 ntTSL 3 BASIC18.31■□□□□ 0.52
Cux1P53564 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Cux1P53564 Gm35025-203ENSMUST00000193519 634 ntTSL 3 BASIC18.31■□□□□ 0.52
Cux1P53564 D5Ertd615e-203ENSMUST00000198493 1032 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Cux1P53564 Gm43380-201ENSMUST00000200421 220 ntBASIC18.31■□□□□ 0.52
Cux1P53564 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cux1P53564 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cux1P53564 5033403F01Rik-201ENSMUST00000181376 1678 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Cux1P53564 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cux1P53564 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
Cux1P53564 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cux1P53564 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cux1P53564 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Cux1P53564 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Cux1P53564 Styk1-202ENSMUST00000121078 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cux1P53564 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Cux1P53564 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Cux1P53564 Zfp809-201ENSMUST00000072465 1425 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cux1P53564 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC18.3■□□□□ 0.52
Cux1P53564 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cux1P53564 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cux1P53564 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cux1P53564 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cux1P53564 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cux1P53564 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cux1P53564 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC18.3■□□□□ 0.52
Cux1P53564 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Cux1P53564 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cux1P53564 Gm4294-201ENSMUST00000105169 614 ntBASIC18.3■□□□□ 0.52
Cux1P53564 Smim20-201ENSMUST00000147148 922 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cux1P53564 Gm20536-201ENSMUST00000172588 406 ntTSL 3 BASIC18.3■□□□□ 0.52
Cux1P53564 Gm8436-201ENSMUST00000210152 1080 ntBASIC18.3■□□□□ 0.52
Cux1P53564 Gm5749-201ENSMUST00000210673 1090 ntBASIC18.3■□□□□ 0.52
Cux1P53564 Fth1-201ENSMUST00000025563 866 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cux1P53564 BC048507-201ENSMUST00000078471 600 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Cux1P53564 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Cux1P53564 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Cux1P53564 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Cux1P53564 E330034L11Rik-201ENSMUST00000200640 1742 ntBASIC18.3■□□□□ 0.52
Cux1P53564 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cux1P53564 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC18.3■□□□□ 0.52
Cux1P53564 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cux1P53564 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cux1P53564 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC18.3■□□□□ 0.52
Cux1P53564 EU599041-202ENSMUST00000205291 1386 ntTSL 5 BASIC18.3■□□□□ 0.52
Cux1P53564 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cux1P53564 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC18.29■□□□□ 0.52
Cux1P53564 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cux1P53564 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Cux1P53564 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cux1P53564 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cux1P53564 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Cux1P53564 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cux1P53564 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cux1P53564 Gm14807-201ENSMUST00000116640 983 ntBASIC18.29■□□□□ 0.52
Cux1P53564 Gm13549-201ENSMUST00000118339 796 ntBASIC18.29■□□□□ 0.52
Cux1P53564 Gm15549-201ENSMUST00000121595 622 ntBASIC18.29■□□□□ 0.52
Cux1P53564 Fam212a-201ENSMUST00000048568 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cux1P53564 Krtap19-5-201ENSMUST00000053460 483 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Cux1P53564 3100002H09Rik-201ENSMUST00000053604 873 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Cux1P53564 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cux1P53564 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cux1P53564 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cux1P53564 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cux1P53564 Ntrk2-209ENSMUST00000225950 2640 ntBASIC18.29■□□□□ 0.52
Cux1P53564 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cux1P53564 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Cux1P53564 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cux1P53564 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cux1P53564 Gm2000-201ENSMUST00000102782 445 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms