Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Traf1P39428 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Traf1P39428 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Traf1P39428 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Traf1P39428 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Traf1P39428 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Traf1P39428 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Traf1P39428 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC14.05□□□□□ -0.16
Traf1P39428 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Traf1P39428 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Traf1P39428 Hnrnph2-205ENSMUST00000113203 2315 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Traf1P39428 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
Traf1P39428 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Traf1P39428 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Traf1P39428 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Traf1P39428 CT025624.1-201ENSMUST00000224007 2700 ntBASIC14.04□□□□□ -0.16
Traf1P39428 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Traf1P39428 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Traf1P39428 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Traf1P39428 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC14.04□□□□□ -0.16
Traf1P39428 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
Traf1P39428 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Traf1P39428 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC14.04□□□□□ -0.16
Traf1P39428 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Traf1P39428 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC14.04□□□□□ -0.16
Traf1P39428 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC14.04□□□□□ -0.16
Traf1P39428 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC14.04□□□□□ -0.16
Traf1P39428 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Traf1P39428 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Traf1P39428 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
Traf1P39428 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Traf1P39428 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Traf1P39428 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Traf1P39428 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Traf1P39428 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC14.04□□□□□ -0.16
Traf1P39428 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Traf1P39428 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Traf1P39428 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Traf1P39428 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Traf1P39428 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Traf1P39428 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Traf1P39428 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC14.04□□□□□ -0.16
Traf1P39428 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Traf1P39428 Gm37660-201ENSMUST00000192754 1732 ntBASIC14.04□□□□□ -0.16
Traf1P39428 Clpb-211ENSMUST00000209579 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Traf1P39428 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Traf1P39428 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Traf1P39428 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Traf1P39428 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Traf1P39428 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Traf1P39428 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Traf1P39428 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC14.03□□□□□ -0.16
Traf1P39428 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Traf1P39428 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Traf1P39428 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Traf1P39428 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Traf1P39428 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC14.03□□□□□ -0.16
Traf1P39428 Gm22902-201ENSMUST00000158488 302 ntBASIC14.03□□□□□ -0.16
Traf1P39428 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC14.03□□□□□ -0.16
Traf1P39428 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC14.03□□□□□ -0.16
Traf1P39428 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC14.03□□□□□ -0.16
Traf1P39428 Gm45484-201ENSMUST00000210310 1141 ntBASIC14.03□□□□□ -0.16
Traf1P39428 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC14.03□□□□□ -0.16
Traf1P39428 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Traf1P39428 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Traf1P39428 Ankrd7-201ENSMUST00000031489 1190 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Traf1P39428 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Traf1P39428 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Traf1P39428 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Traf1P39428 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC14.03□□□□□ -0.16
Traf1P39428 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Traf1P39428 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Traf1P39428 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Traf1P39428 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Traf1P39428 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
Traf1P39428 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC14.03□□□□□ -0.16
Traf1P39428 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Traf1P39428 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Traf1P39428 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Traf1P39428 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Traf1P39428 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Traf1P39428 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Traf1P39428 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Traf1P39428 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Traf1P39428 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Traf1P39428 C230014O12Rik-201ENSMUST00000134921 2668 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Traf1P39428 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Traf1P39428 Gm28719-201ENSMUST00000187779 1757 ntBASIC14.02□□□□□ -0.16
Traf1P39428 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Traf1P39428 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC14.02□□□□□ -0.16
Traf1P39428 AC154671.1-201ENSMUST00000228617 1578 ntBASIC14.02□□□□□ -0.16
Traf1P39428 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Traf1P39428 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Traf1P39428 Gm9062-201ENSMUST00000117712 727 ntBASIC14.02□□□□□ -0.17
Traf1P39428 Gm11331-201ENSMUST00000119764 288 ntBASIC14.02□□□□□ -0.17
Traf1P39428 Gm11450-201ENSMUST00000121144 333 ntBASIC14.02□□□□□ -0.17
Traf1P39428 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Traf1P39428 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC14.02□□□□□ -0.17
Traf1P39428 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Traf1P39428 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC14.02□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms