Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gm9121-201ENSMUST00000193749 1071 ntBASIC9.82□□□□□ -0.84
Cdx1P18111 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC9.82□□□□□ -0.84
Cdx1P18111 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC9.82□□□□□ -0.84
Cdx1P18111 Gm42599-201ENSMUST00000201308 469 ntBASIC9.82□□□□□ -0.84
Cdx1P18111 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC9.82□□□□□ -0.84
Cdx1P18111 AC140451.2-201ENSMUST00000228030 664 ntBASIC9.82□□□□□ -0.84
Cdx1P18111 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC9.82□□□□□ -0.84
Cdx1P18111 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx1P18111 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx1P18111 Gm8399-201ENSMUST00000082300 1117 ntBASIC9.82□□□□□ -0.84
Cdx1P18111 Ppp1r16b-202ENSMUST00000052927 6685 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx1P18111 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx1P18111 Adamts10-201ENSMUST00000087623 4043 ntAPPRIS P1 TSL 5 BASIC9.82□□□□□ -0.84
Cdx1P18111 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx1P18111 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx1P18111 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx1P18111 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx1P18111 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx1P18111 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx1P18111 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC9.82□□□□□ -0.84
Cdx1P18111 Gm45449-201ENSMUST00000211485 1960 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx1P18111 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx1P18111 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx1P18111 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx1P18111 Nectin4-201ENSMUST00000006578 3636 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx1P18111 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx1P18111 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx1P18111 Rapgef2-206ENSMUST00000195708 6964 ntAPPRIS P1 TSL 5 BASIC9.82□□□□□ -0.84
Cdx1P18111 Gm43172-201ENSMUST00000202139 2137 ntBASIC9.82□□□□□ -0.84
Cdx1P18111 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx1P18111 Als2cl-201ENSMUST00000084926 5079 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx1P18111 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx1P18111 Gm7553-201ENSMUST00000185805 1426 ntBASIC9.82□□□□□ -0.84
Cdx1P18111 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx1P18111 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Wdr75-201ENSMUST00000027139 2953 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Hpcal4-201ENSMUST00000059667 4931 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC9.81□□□□□ -0.84
Cdx1P18111 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Erbin-201ENSMUST00000022222 6369 ntAPPRIS ALT2 TSL 5 BASIC9.81□□□□□ -0.84
Cdx1P18111 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC9.81□□□□□ -0.84
Cdx1P18111 Gm6124-201ENSMUST00000188240 2580 ntBASIC9.81□□□□□ -0.84
Cdx1P18111 Piwil1-201ENSMUST00000086056 4016 ntAPPRIS P2 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Adgrl3-201ENSMUST00000036068 6203 ntAPPRIS ALT2 TSL 5 BASIC9.81□□□□□ -0.84
Cdx1P18111 Adgrl3-202ENSMUST00000072521 6203 ntAPPRIS P3 TSL 5 BASIC9.81□□□□□ -0.84
Cdx1P18111 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Gm19165-201ENSMUST00000204453 1982 ntBASIC9.81□□□□□ -0.84
Cdx1P18111 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC9.81□□□□□ -0.84
Cdx1P18111 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC9.81□□□□□ -0.84
Cdx1P18111 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Ccdc33-201ENSMUST00000042205 2632 ntAPPRIS P3 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Arc-202ENSMUST00000110009 3054 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Arc-201ENSMUST00000023268 3055 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Gm17230-201ENSMUST00000171194 3942 ntBASIC9.81□□□□□ -0.84
Cdx1P18111 Usp2-203ENSMUST00000114830 2122 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC9.81□□□□□ -0.84
Cdx1P18111 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC9.81□□□□□ -0.84
Cdx1P18111 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC9.81□□□□□ -0.84
Cdx1P18111 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC9.81□□□□□ -0.84
Cdx1P18111 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC9.81□□□□□ -0.84
Cdx1P18111 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Olfr311-201ENSMUST00000071625 927 ntAPPRIS P1 BASIC9.81□□□□□ -0.84
Cdx1P18111 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC9.81□□□□□ -0.84
Cdx1P18111 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Zfp687-201ENSMUST00000019482 4632 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC9.81□□□□□ -0.84
Cdx1P18111 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Pabpc1-201ENSMUST00000001809 2817 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC9.81□□□□□ -0.84
Cdx1P18111 Slc12a7-201ENSMUST00000017900 5142 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Zcchc7-203ENSMUST00000107824 2503 ntAPPRIS P1 TSL 5 BASIC9.81□□□□□ -0.84
Cdx1P18111 Prok1-202ENSMUST00000197758 3063 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Sh2d5-201ENSMUST00000105823 3529 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 AI854703-201ENSMUST00000095938 3517 ntAPPRIS P1 TSL 2 BASIC9.81□□□□□ -0.84
Cdx1P18111 Trp53inp2-201ENSMUST00000043237 3979 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Pck2-201ENSMUST00000048781 3400 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
Cdx1P18111 Gtf3c1-204ENSMUST00000205659 6570 ntAPPRIS ALT2 TSL 5 BASIC9.8□□□□□ -0.84
Cdx1P18111 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Cdx1P18111 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Cdx1P18111 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Cdx1P18111 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC9.8□□□□□ -0.84
Cdx1P18111 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.84
Cdx1P18111 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Cdx1P18111 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC9.8□□□□□ -0.84
Cdx1P18111 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Cdx1P18111 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC9.8□□□□□ -0.84
Cdx1P18111 Gm43999-201ENSMUST00000204286 2889 ntBASIC9.8□□□□□ -0.84
Cdx1P18111 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Cdx1P18111 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC9.8□□□□□ -0.84
Cdx1P18111 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC9.8□□□□□ -0.84
Retrieved 100 of 76,532 protein–RNA pairs in 50.7 ms