Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Gm11989-201ENSMUST00000117240 672 ntBASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Gm11362-201ENSMUST00000118838 850 ntBASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Gm12997-201ENSMUST00000120207 640 ntBASIC12.45□□□□□ -0.42
Vps28Q9D1C8 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Gm2260-201ENSMUST00000184965 657 ntBASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Gm44882-201ENSMUST00000205702 802 ntBASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Gm45186-201ENSMUST00000206874 478 ntBASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Gm18636-201ENSMUST00000218846 1066 ntBASIC12.45□□□□□ -0.42
Vps28Q9D1C8 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Haus6-201ENSMUST00000070607 6158 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Gm5053-201ENSMUST00000208361 1678 ntBASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Vps28Q9D1C8 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Gm43365-201ENSMUST00000196522 2106 ntBASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Mbnl2-204ENSMUST00000227012 2390 ntBASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Gm8913-201ENSMUST00000209491 641 ntBASIC12.44□□□□□ -0.42
Vps28Q9D1C8 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 CT485787.1-201ENSMUST00000225617 968 ntBASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC12.44□□□□□ -0.42
Vps28Q9D1C8 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Paupar-201ENSMUST00000194826 3482 ntBASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Gm5846-201ENSMUST00000193146 1414 ntBASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Vps28Q9D1C8 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Vps28Q9D1C8 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Vps28Q9D1C8 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC12.43□□□□□ -0.42
Vps28Q9D1C8 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Vps28Q9D1C8 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Vps28Q9D1C8 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Vps28Q9D1C8 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Vps28Q9D1C8 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Vps28Q9D1C8 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Vps28Q9D1C8 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC12.43□□□□□ -0.42
Vps28Q9D1C8 Gm43051-201ENSMUST00000201096 2678 ntBASIC12.43□□□□□ -0.42
Vps28Q9D1C8 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC12.43□□□□□ -0.42
Vps28Q9D1C8 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Vps28Q9D1C8 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Vps28Q9D1C8 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Vps28Q9D1C8 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Vps28Q9D1C8 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC12.43□□□□□ -0.42
Vps28Q9D1C8 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Vps28Q9D1C8 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Vps28Q9D1C8 Gm13996-201ENSMUST00000118456 430 ntBASIC12.43□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 86.7 ms