Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msh4Q99MT2 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Tns2-201ENSMUST00000046144 4718 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Gm11597-201ENSMUST00000121423 964 ntBASIC11.82□□□□□ -0.52
Msh4Q99MT2 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Rmrp-201ENSMUST00000157463 271 ntBASIC11.82□□□□□ -0.52
Msh4Q99MT2 Gm25668-201ENSMUST00000157700 129 ntBASIC11.82□□□□□ -0.52
Msh4Q99MT2 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC11.82□□□□□ -0.52
Msh4Q99MT2 AL732506.1-201ENSMUST00000226420 281 ntBASIC11.82□□□□□ -0.52
Msh4Q99MT2 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msh4Q99MT2 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Gm42943-201ENSMUST00000199676 3242 ntBASIC11.81□□□□□ -0.52
Msh4Q99MT2 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msh4Q99MT2 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Armt1-203ENSMUST00000118544 5044 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Gm44207-201ENSMUST00000204568 1424 ntBASIC11.81□□□□□ -0.52
Msh4Q99MT2 Gm14999-201ENSMUST00000121039 624 ntBASIC11.81□□□□□ -0.52
Msh4Q99MT2 Gm15547-201ENSMUST00000122152 333 ntBASIC11.81□□□□□ -0.52
Msh4Q99MT2 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Gm4857-201ENSMUST00000192718 785 ntBASIC11.81□□□□□ -0.52
Msh4Q99MT2 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Gm39404-201ENSMUST00000216350 313 ntBASIC11.81□□□□□ -0.52
Msh4Q99MT2 AC125209.1-201ENSMUST00000225812 766 ntBASIC11.81□□□□□ -0.52
Msh4Q99MT2 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Gm8038-201ENSMUST00000164674 2044 ntBASIC11.81□□□□□ -0.52
Msh4Q99MT2 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msh4Q99MT2 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Msh4Q99MT2 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Msh4Q99MT2 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Msh4Q99MT2 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Msh4Q99MT2 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC11.8□□□□□ -0.52
Msh4Q99MT2 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msh4Q99MT2 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Msh4Q99MT2 Pcif1-201ENSMUST00000041643 5772 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msh4Q99MT2 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Msh4Q99MT2 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msh4Q99MT2 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msh4Q99MT2 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Msh4Q99MT2 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msh4Q99MT2 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Msh4Q99MT2 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msh4Q99MT2 Mir877-201ENSMUST00000104738 85 ntBASIC11.8□□□□□ -0.52
Msh4Q99MT2 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msh4Q99MT2 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC11.8□□□□□ -0.52
Msh4Q99MT2 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC11.8□□□□□ -0.52
Msh4Q99MT2 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC11.8□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms