Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Trim56Q80VI1 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC14.28□□□□□ -0.12
Trim56Q80VI1 Gm29179-208ENSMUST00000190450 1137 ntTSL 5 BASIC14.28□□□□□ -0.12
Trim56Q80VI1 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim56Q80VI1 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim56Q80VI1 CT025694.1-201ENSMUST00000226188 934 ntBASIC14.28□□□□□ -0.12
Trim56Q80VI1 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim56Q80VI1 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim56Q80VI1 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim56Q80VI1 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim56Q80VI1 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim56Q80VI1 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim56Q80VI1 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim56Q80VI1 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim56Q80VI1 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim56Q80VI1 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim56Q80VI1 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Trim56Q80VI1 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim56Q80VI1 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Trim56Q80VI1 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Trim56Q80VI1 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim56Q80VI1 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Trim56Q80VI1 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim56Q80VI1 Gm43267-201ENSMUST00000199664 1796 ntBASIC14.27□□□□□ -0.12
Trim56Q80VI1 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Trim56Q80VI1 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim56Q80VI1 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim56Q80VI1 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Trim56Q80VI1 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim56Q80VI1 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim56Q80VI1 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim56Q80VI1 Gm13812-201ENSMUST00000118061 1347 ntBASIC14.27□□□□□ -0.12
Trim56Q80VI1 Gm13810-201ENSMUST00000118584 1347 ntBASIC14.27□□□□□ -0.12
Trim56Q80VI1 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim56Q80VI1 Gm15172-201ENSMUST00000118945 1046 ntBASIC14.27□□□□□ -0.13
Trim56Q80VI1 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
Trim56Q80VI1 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim56Q80VI1 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC14.27□□□□□ -0.13
Trim56Q80VI1 Mir7070-201ENSMUST00000183657 86 ntBASIC14.27□□□□□ -0.13
Trim56Q80VI1 Mir6927-201ENSMUST00000184494 71 ntBASIC14.27□□□□□ -0.13
Trim56Q80VI1 Gm8956-201ENSMUST00000203939 825 ntBASIC14.27□□□□□ -0.13
Trim56Q80VI1 Gm9445-201ENSMUST00000207454 1285 ntBASIC14.27□□□□□ -0.13
Trim56Q80VI1 Gm270-201ENSMUST00000223010 976 ntBASIC14.27□□□□□ -0.13
Trim56Q80VI1 AC121960.1-201ENSMUST00000227982 564 ntBASIC14.27□□□□□ -0.13
Trim56Q80VI1 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC14.27□□□□□ -0.13
Trim56Q80VI1 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim56Q80VI1 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Trim56Q80VI1 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim56Q80VI1 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim56Q80VI1 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim56Q80VI1 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim56Q80VI1 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Trim56Q80VI1 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim56Q80VI1 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC14.27□□□□□ -0.13
Trim56Q80VI1 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim56Q80VI1 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim56Q80VI1 Gm37269-201ENSMUST00000193906 1891 ntBASIC14.27□□□□□ -0.13
Trim56Q80VI1 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim56Q80VI1 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim56Q80VI1 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim56Q80VI1 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim56Q80VI1 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim56Q80VI1 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim56Q80VI1 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Gm15515-201ENSMUST00000117827 822 ntBASIC14.26□□□□□ -0.13
Trim56Q80VI1 Gm15004-201ENSMUST00000119192 630 ntBASIC14.26□□□□□ -0.13
Trim56Q80VI1 Gm15610-201ENSMUST00000120584 195 ntBASIC14.26□□□□□ -0.13
Trim56Q80VI1 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim56Q80VI1 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Trim56Q80VI1 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC14.26□□□□□ -0.13
Trim56Q80VI1 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim56Q80VI1 Gm9072-201ENSMUST00000218390 1514 ntBASIC14.25□□□□□ -0.13
Trim56Q80VI1 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 160.6 ms