Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Nrg1-202ENSMUST00000207417 3138 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Sh3rf1Q69ZI1 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Sh3rf1Q69ZI1 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC12.33□□□□□ -0.44
Sh3rf1Q69ZI1 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.44
Sh3rf1Q69ZI1 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sh3rf1Q69ZI1 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC12.33□□□□□ -0.44
Sh3rf1Q69ZI1 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sh3rf1Q69ZI1 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Sh3rf1Q69ZI1 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sh3rf1Q69ZI1 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sh3rf1Q69ZI1 Tfdp2-204ENSMUST00000179065 2213 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Sh3rf1Q69ZI1 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sh3rf1Q69ZI1 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sh3rf1Q69ZI1 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sh3rf1Q69ZI1 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sh3rf1Q69ZI1 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sh3rf1Q69ZI1 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.44
Sh3rf1Q69ZI1 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Kifap3-201ENSMUST00000027877 3946 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Ippk-201ENSMUST00000021817 2856 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Aplp2-209ENSMUST00000217641 3462 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Vps16-201ENSMUST00000028900 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Gm4819-201ENSMUST00000182170 1009 ntBASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Tmem132a-201ENSMUST00000025645 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Pag1-201ENSMUST00000108384 3729 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Dnajb6-201ENSMUST00000008733 2918 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sh3rf1Q69ZI1 Gm42913-201ENSMUST00000197936 1853 ntBASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Gm43172-201ENSMUST00000202139 2137 ntBASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Retreg1-206ENSMUST00000228306 1430 ntBASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Gm12502-201ENSMUST00000120197 444 ntBASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Gm25668-201ENSMUST00000157700 129 ntBASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Gm2383-201ENSMUST00000181461 807 ntBASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Gm21769-201ENSMUST00000211922 111 ntBASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 AC069562.3-201ENSMUST00000225387 587 ntBASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Vdr-201ENSMUST00000023119 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Sh3rf1Q69ZI1 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 68.7 ms