Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Ccdc88aQ5SNZ0 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
Ccdc88aQ5SNZ0 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
Ccdc88aQ5SNZ0 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
Ccdc88aQ5SNZ0 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Gm12516-201ENSMUST00000120819 385 ntBASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Pfdn6-202ENSMUST00000173363 871 ntTSL 2 BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Diablo-210ENSMUST00000200247 748 ntTSL 5 BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Gm36970-201ENSMUST00000193688 1859 ntBASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Rabggtb-202ENSMUST00000167111 1418 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC13.83□□□□□ -0.2
Ccdc88aQ5SNZ0 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Gm14154-201ENSMUST00000142642 579 ntTSL 3 BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 4631405J19Rik-204ENSMUST00000145926 936 ntTSL 3 BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 2610316D01Rik-201ENSMUST00000181047 924 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Gm5852-201ENSMUST00000194119 1021 ntBASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Gm5542-201ENSMUST00000195485 1089 ntBASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Gm43634-201ENSMUST00000202671 675 ntTSL 3 BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Gm44158-201ENSMUST00000203881 505 ntBASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Gm9132-201ENSMUST00000210182 832 ntBASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Gm36074-201ENSMUST00000221383 591 ntTSL 5 BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Rpl3l-201ENSMUST00000045186 1033 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Ccdc60-202ENSMUST00000086483 2168 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Gm9387-201ENSMUST00000098624 1320 ntBASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Gm14724-201ENSMUST00000118400 537 ntBASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Gm18159-201ENSMUST00000174516 1070 ntBASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 D5Ertd615e-203ENSMUST00000198493 1032 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Nupl1-206ENSMUST00000225111 2936 ntBASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ccdc88aQ5SNZ0 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ccdc88aQ5SNZ0 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Ccdc88aQ5SNZ0 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ccdc88aQ5SNZ0 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Ccdc88aQ5SNZ0 Gm43807-201ENSMUST00000200678 1781 ntBASIC13.81□□□□□ -0.2
Ccdc88aQ5SNZ0 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ccdc88aQ5SNZ0 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ccdc88aQ5SNZ0 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ccdc88aQ5SNZ0 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ccdc88aQ5SNZ0 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ccdc88aQ5SNZ0 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ccdc88aQ5SNZ0 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Ccdc88aQ5SNZ0 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Ccdc88aQ5SNZ0 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ccdc88aQ5SNZ0 Gm16071-201ENSMUST00000119589 793 ntBASIC13.81□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 52.7 ms