Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Rnf180Q3U827 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Ncmap-201ENSMUST00000064481 1448 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf180Q3U827 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf180Q3U827 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf180Q3U827 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf180Q3U827 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf180Q3U827 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Rnf180Q3U827 Lrrc75aos2-202ENSMUST00000128647 1227 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf180Q3U827 Gm4705-201ENSMUST00000177415 354 ntBASIC14.06□□□□□ -0.16
Rnf180Q3U827 Gm27168-201ENSMUST00000183394 361 ntTSL 3 BASIC14.06□□□□□ -0.16
Rnf180Q3U827 Gm29642-201ENSMUST00000186170 921 ntTSL 2 BASIC14.06□□□□□ -0.16
Rnf180Q3U827 Gm42375-201ENSMUST00000206226 745 ntTSL 5 BASIC14.06□□□□□ -0.16
Rnf180Q3U827 Gm44908-201ENSMUST00000208610 266 ntBASIC14.06□□□□□ -0.16
Rnf180Q3U827 AC129017.2-201ENSMUST00000226118 1284 ntBASIC14.06□□□□□ -0.16
Rnf180Q3U827 Cxcl10-201ENSMUST00000038816 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf180Q3U827 Gm5292-201ENSMUST00000073317 580 ntBASIC14.06□□□□□ -0.16
Rnf180Q3U827 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf180Q3U827 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf180Q3U827 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC14.06□□□□□ -0.16
Rnf180Q3U827 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Rnf180Q3U827 Gm2420-201ENSMUST00000119864 2149 ntBASIC14.06□□□□□ -0.16
Rnf180Q3U827 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf180Q3U827 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf180Q3U827 Map7d2-202ENSMUST00000112470 1350 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf180Q3U827 Sdcbp-204ENSMUST00000108374 1803 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf180Q3U827 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf180Q3U827 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Rnf180Q3U827 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC14.06□□□□□ -0.16
Rnf180Q3U827 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Gm37297-201ENSMUST00000192974 2384 ntBASIC14.05□□□□□ -0.16
Rnf180Q3U827 Apol9a-202ENSMUST00000089452 1527 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Il34-201ENSMUST00000076846 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Gm16209-201ENSMUST00000118457 627 ntBASIC14.05□□□□□ -0.16
Rnf180Q3U827 Gm15610-201ENSMUST00000120584 195 ntBASIC14.05□□□□□ -0.16
Rnf180Q3U827 Defa-ps16-201ENSMUST00000121939 171 ntBASIC14.05□□□□□ -0.16
Rnf180Q3U827 Gm10171-201ENSMUST00000126220 628 ntBASIC14.05□□□□□ -0.16
Rnf180Q3U827 Rps19-ps10-201ENSMUST00000159750 435 ntBASIC14.05□□□□□ -0.16
Rnf180Q3U827 Gm17207-201ENSMUST00000168686 645 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Gm27444-201ENSMUST00000184157 137 ntBASIC14.05□□□□□ -0.16
Rnf180Q3U827 Gm27440-201ENSMUST00000184785 107 ntBASIC14.05□□□□□ -0.16
Rnf180Q3U827 Gm43106-201ENSMUST00000199485 637 ntBASIC14.05□□□□□ -0.16
Rnf180Q3U827 Gm8268-201ENSMUST00000209683 458 ntBASIC14.05□□□□□ -0.16
Rnf180Q3U827 Gm18001-201ENSMUST00000212023 688 ntBASIC14.05□□□□□ -0.16
Rnf180Q3U827 CT571271.1-201ENSMUST00000227071 670 ntBASIC14.05□□□□□ -0.16
Rnf180Q3U827 Prl7b1-201ENSMUST00000080595 925 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf180Q3U827 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Gm10233-201ENSMUST00000089275 628 ntBASIC14.05□□□□□ -0.16
Rnf180Q3U827 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Fhl1-202ENSMUST00000114768 1337 ntTSL 5 BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Gm8968-201ENSMUST00000199133 1303 ntBASIC14.05□□□□□ -0.16
Rnf180Q3U827 Asgr1-202ENSMUST00000092959 1308 ntAPPRIS P3 TSL 2 BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Gm29295-201ENSMUST00000190004 1371 ntTSL 5 BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Arxes1-201ENSMUST00000057625 1580 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Rnf180Q3U827 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf180Q3U827 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf180Q3U827 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Rnf180Q3U827 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf180Q3U827 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf180Q3U827 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf180Q3U827 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Rnf180Q3U827 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf180Q3U827 Gm43045-201ENSMUST00000198725 2095 ntBASIC14.04□□□□□ -0.16
Rnf180Q3U827 Bcl2l11-204ENSMUST00000103211 672 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
Rnf180Q3U827 Gm14227-201ENSMUST00000119431 629 ntBASIC14.04□□□□□ -0.16
Rnf180Q3U827 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf180Q3U827 4930507D10Rik-201ENSMUST00000137411 1152 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf180Q3U827 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf180Q3U827 Pdc-201ENSMUST00000165062 1246 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
Rnf180Q3U827 Gm20493-201ENSMUST00000173706 213 ntBASIC14.04□□□□□ -0.16
Rnf180Q3U827 Vmn2r-ps9-201ENSMUST00000177446 1099 ntBASIC14.04□□□□□ -0.16
Rnf180Q3U827 Map1lc3b-205ENSMUST00000181948 766 ntTSL 2 BASIC14.04□□□□□ -0.16
Rnf180Q3U827 Abhd14a-204ENSMUST00000185334 1109 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Rnf180Q3U827 Gm7815-201ENSMUST00000196104 832 ntBASIC14.04□□□□□ -0.16
Rnf180Q3U827 Chn2-210ENSMUST00000203091 755 ntTSL 5 BASIC14.04□□□□□ -0.16
Rnf180Q3U827 Gm19228-201ENSMUST00000214030 717 ntBASIC14.04□□□□□ -0.16
Rnf180Q3U827 AC124503.1-201ENSMUST00000218524 526 ntTSL 3 BASIC14.04□□□□□ -0.16
Rnf180Q3U827 AC164437.3-201ENSMUST00000228323 347 ntBASIC14.04□□□□□ -0.16
Rnf180Q3U827 Ctrl-201ENSMUST00000034368 879 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf180Q3U827 Krtap4-1-201ENSMUST00000081007 1015 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Rnf180Q3U827 Larp1b-204ENSMUST00000099121 1030 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 73 ms