Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Nps-202ENSMUST00000210697 1082 ntTSL 5 BASIC12.55□□□□□ -0.4
Sox9Q04887 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC12.55□□□□□ -0.4
Sox9Q04887 AC166344.1-201ENSMUST00000223745 674 ntBASIC12.55□□□□□ -0.4
Sox9Q04887 AC121960.1-201ENSMUST00000227982 564 ntBASIC12.55□□□□□ -0.4
Sox9Q04887 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sox9Q04887 Cox17-201ENSMUST00000050273 444 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sox9Q04887 Prss55-201ENSMUST00000089338 1032 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sox9Q04887 Olfr1339-201ENSMUST00000094832 948 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Sox9Q04887 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sox9Q04887 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Sox9Q04887 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Sox9Q04887 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Sox9Q04887 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sox9Q04887 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sox9Q04887 Clec4a3-201ENSMUST00000088468 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sox9Q04887 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sox9Q04887 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sox9Q04887 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Sox9Q04887 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Sox9Q04887 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Sox9Q04887 Slc37a4-202ENSMUST00000213268 1353 ntAPPRIS ALT1 TSL 5 BASIC12.55□□□□□ -0.4
Sox9Q04887 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sox9Q04887 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox9Q04887 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC12.54□□□□□ -0.4
Sox9Q04887 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox9Q04887 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Sox9Q04887 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Sox9Q04887 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox9Q04887 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC12.54□□□□□ -0.4
Sox9Q04887 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox9Q04887 Ccdc90b-202ENSMUST00000085017 1494 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Sox9Q04887 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Sox9Q04887 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC12.54□□□□□ -0.4
Sox9Q04887 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox9Q04887 Gm37105-201ENSMUST00000192251 2085 ntBASIC12.54□□□□□ -0.4
Sox9Q04887 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Sox9Q04887 Gm13278-201ENSMUST00000177771 549 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Sox9Q04887 Gm13275-201ENSMUST00000178347 549 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Sox9Q04887 Gm13277-201ENSMUST00000178480 549 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Sox9Q04887 Gm13279-201ENSMUST00000178602 549 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Sox9Q04887 Gm13289-201ENSMUST00000179158 549 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Sox9Q04887 Gm13276-201ENSMUST00000179372 549 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Sox9Q04887 Gm13287-201ENSMUST00000179490 549 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Sox9Q04887 Gm27241-202ENSMUST00000185013 570 ntTSL 2 BASIC12.54□□□□□ -0.4
Sox9Q04887 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Sox9Q04887 Ighv1-2-201ENSMUST00000195325 378 ntBASIC12.54□□□□□ -0.4
Sox9Q04887 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Sox9Q04887 Gm45410-201ENSMUST00000211331 1093 ntBASIC12.54□□□□□ -0.4
Sox9Q04887 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC12.54□□□□□ -0.4
Sox9Q04887 AC153962.2-201ENSMUST00000219417 550 ntBASIC12.54□□□□□ -0.4
Sox9Q04887 AC129308.3-201ENSMUST00000225652 524 ntBASIC12.54□□□□□ -0.4
Sox9Q04887 Taar9-201ENSMUST00000041180 1047 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Sox9Q04887 Myf6-201ENSMUST00000044210 1263 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox9Q04887 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox9Q04887 Gm13271-201ENSMUST00000094992 549 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Sox9Q04887 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox9Q04887 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox9Q04887 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox9Q04887 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox9Q04887 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox9Q04887 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox9Q04887 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Sox9Q04887 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Sox9Q04887 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox9Q04887 Gm6903-201ENSMUST00000160509 1366 ntBASIC12.54□□□□□ -0.4
Sox9Q04887 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox9Q04887 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
Sox9Q04887 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox9Q04887 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Sox9Q04887 AC137842.1-201ENSMUST00000227896 2064 ntBASIC12.53□□□□□ -0.4
Sox9Q04887 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox9Q04887 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox9Q04887 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC12.53□□□□□ -0.4
Sox9Q04887 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox9Q04887 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox9Q04887 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sox9Q04887 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sox9Q04887 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox9Q04887 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox9Q04887 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Sox9Q04887 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox9Q04887 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Sox9Q04887 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox9Q04887 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox9Q04887 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Sox9Q04887 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Sox9Q04887 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC12.53□□□□□ -0.4
Sox9Q04887 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox9Q04887 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Sox9Q04887 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC12.53□□□□□ -0.4
Sox9Q04887 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox9Q04887 Gm13791-201ENSMUST00000123263 608 ntTSL 3 BASIC12.53□□□□□ -0.4
Sox9Q04887 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC12.53□□□□□ -0.4
Sox9Q04887 Gm16876-201ENSMUST00000151945 760 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sox9Q04887 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC12.53□□□□□ -0.4
Sox9Q04887 Dydc1-203ENSMUST00000189865 995 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox9Q04887 Cabcoco1-201ENSMUST00000020103 1262 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox9Q04887 Gm5340-201ENSMUST00000203733 880 ntBASIC12.53□□□□□ -0.4
Sox9Q04887 Zmiz1os1-202ENSMUST00000225188 1223 ntBASIC12.53□□□□□ -0.4
Sox9Q04887 BC030499-201ENSMUST00000046361 959 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 81.5 ms