Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 n-R5s185-201ENSMUST00000083953 119 ntBASIC18.35■□□□□ 0.53
Cux1P53564 Cd55b-201ENSMUST00000112488 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cux1P53564 E330023G01Rik-201ENSMUST00000186387 1483 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Cux1P53564 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cux1P53564 Gm38089-201ENSMUST00000193585 1514 ntBASIC18.35■□□□□ 0.53
Cux1P53564 Asz1-201ENSMUST00000010940 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cux1P53564 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cux1P53564 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cux1P53564 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC18.35■□□□□ 0.53
Cux1P53564 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cux1P53564 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cux1P53564 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Cux1P53564 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cux1P53564 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cux1P53564 Gm13117-201ENSMUST00000120894 691 ntBASIC18.34■□□□□ 0.53
Cux1P53564 Gm13022-201ENSMUST00000121181 285 ntBASIC18.34■□□□□ 0.53
Cux1P53564 Gm21778-201ENSMUST00000178779 471 ntBASIC18.34■□□□□ 0.53
Cux1P53564 Gm19587-201ENSMUST00000191395 545 ntBASIC18.34■□□□□ 0.53
Cux1P53564 Gm18463-201ENSMUST00000207258 474 ntBASIC18.34■□□□□ 0.53
Cux1P53564 Gm18460-201ENSMUST00000208088 464 ntBASIC18.34■□□□□ 0.53
Cux1P53564 AC153929.1-201ENSMUST00000219009 303 ntBASIC18.34■□□□□ 0.53
Cux1P53564 Krtap4-13-201ENSMUST00000050106 815 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Cux1P53564 Gm5805-201ENSMUST00000072779 456 ntBASIC18.34■□□□□ 0.53
Cux1P53564 Rps10-ps1-201ENSMUST00000074353 495 ntBASIC18.34■□□□□ 0.53
Cux1P53564 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Cux1P53564 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cux1P53564 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cux1P53564 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cux1P53564 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Cux1P53564 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cux1P53564 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cux1P53564 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cux1P53564 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Cux1P53564 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Cux1P53564 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cux1P53564 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cux1P53564 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cux1P53564 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cux1P53564 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cux1P53564 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cux1P53564 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Cux1P53564 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
Cux1P53564 Gm8522-201ENSMUST00000118416 1929 ntBASIC18.33■□□□□ 0.53
Cux1P53564 Gm11960-201ENSMUST00000122068 925 ntBASIC18.33■□□□□ 0.53
Cux1P53564 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC18.33■□□□□ 0.53
Cux1P53564 Gm38389-201ENSMUST00000147871 653 ntTSL 3 BASIC18.33■□□□□ 0.53
Cux1P53564 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Cux1P53564 Gm45716-203ENSMUST00000153734 644 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Cux1P53564 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Cux1P53564 2610316D01Rik-201ENSMUST00000181047 924 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Cux1P53564 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Cux1P53564 Gm9884-201ENSMUST00000194343 1222 ntBASIC18.33■□□□□ 0.53
Cux1P53564 Gm43692-201ENSMUST00000198236 1062 ntBASIC18.33■□□□□ 0.53
Cux1P53564 Gm43001-201ENSMUST00000198925 603 ntTSL 3 BASIC18.33■□□□□ 0.53
Cux1P53564 Gm18514-201ENSMUST00000218980 436 ntBASIC18.33■□□□□ 0.53
Cux1P53564 Rnf17-202ENSMUST00000223627 2077 ntBASIC18.33■□□□□ 0.53
Cux1P53564 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Cux1P53564 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Cux1P53564 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Cux1P53564 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Cux1P53564 Gm1840-201ENSMUST00000051687 1432 ntBASIC18.33■□□□□ 0.53
Cux1P53564 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Cux1P53564 Ccl21a-201ENSMUST00000095114 870 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Cux1P53564 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Cux1P53564 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Cux1P53564 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Cux1P53564 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
Cux1P53564 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC18.33■□□□□ 0.52
Cux1P53564 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cux1P53564 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Cux1P53564 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cux1P53564 A530032D15Rik-201ENSMUST00000160792 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cux1P53564 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Cux1P53564 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC18.33■□□□□ 0.52
Cux1P53564 Ighv10-1-201ENSMUST00000103492 359 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Cux1P53564 0610010K14Rik-206ENSMUST00000108576 576 ntAPPRIS ALT1 TSL 2 BASIC18.33■□□□□ 0.52
Cux1P53564 Smim11-202ENSMUST00000118064 782 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
Cux1P53564 Zfp667-204ENSMUST00000153840 596 ntTSL 3 BASIC18.33■□□□□ 0.52
Cux1P53564 Gm16271-201ENSMUST00000162837 220 ntTSL 5 BASIC18.33■□□□□ 0.52
Cux1P53564 Gm21844-201ENSMUST00000178699 663 ntTSL 3 BASIC18.33■□□□□ 0.52
Cux1P53564 Gm44759-201ENSMUST00000206057 430 ntTSL 3 BASIC18.33■□□□□ 0.52
Cux1P53564 CT009536.2-201ENSMUST00000225370 665 ntBASIC18.33■□□□□ 0.52
Cux1P53564 Pgap2-201ENSMUST00000033292 1201 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
Cux1P53564 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC18.33■□□□□ 0.52
Cux1P53564 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC18.33■□□□□ 0.52
Cux1P53564 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cux1P53564 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cux1P53564 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cux1P53564 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cux1P53564 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
Cux1P53564 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cux1P53564 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Cux1P53564 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Cux1P53564 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Cux1P53564 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cux1P53564 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cux1P53564 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cux1P53564 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
Cux1P53564 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cux1P53564 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms