Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Gm37905-201ENSMUST00000195310 341 ntBASIC13.59□□□□□ -0.23
Col2a1P28481 Mllt11-204ENSMUST00000198948 793 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
Col2a1P28481 Gm44315-201ENSMUST00000203041 219 ntBASIC13.59□□□□□ -0.23
Col2a1P28481 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col2a1P28481 Gm29961-201ENSMUST00000214692 644 ntTSL 5 BASIC13.59□□□□□ -0.23
Col2a1P28481 AC164105.2-201ENSMUST00000215484 524 ntTSL 5 BASIC13.59□□□□□ -0.23
Col2a1P28481 Gm3285-201ENSMUST00000218443 908 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
Col2a1P28481 Myl6-211ENSMUST00000219236 692 ntTSL 2 BASIC13.59□□□□□ -0.23
Col2a1P28481 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC13.59□□□□□ -0.23
Col2a1P28481 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col2a1P28481 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col2a1P28481 Hpgd-201ENSMUST00000034026 1683 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col2a1P28481 Hars2-206ENSMUST00000152954 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col2a1P28481 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col2a1P28481 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col2a1P28481 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col2a1P28481 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Col2a1P28481 Gm43242-201ENSMUST00000199507 1776 ntBASIC13.59□□□□□ -0.23
Col2a1P28481 AC166836.1-201ENSMUST00000219933 1795 ntBASIC13.59□□□□□ -0.23
Col2a1P28481 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col2a1P28481 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col2a1P28481 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Col2a1P28481 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Col2a1P28481 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.23
Col2a1P28481 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Col2a1P28481 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col2a1P28481 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col2a1P28481 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Col2a1P28481 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col2a1P28481 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col2a1P28481 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col2a1P28481 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col2a1P28481 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col2a1P28481 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col2a1P28481 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Col2a1P28481 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col2a1P28481 Olfr22-ps1-201ENSMUST00000115991 1237 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Col2a1P28481 Gm15615-201ENSMUST00000118876 198 ntBASIC13.58□□□□□ -0.24
Col2a1P28481 Gm11944-201ENSMUST00000152576 873 ntTSL 3 BASIC13.58□□□□□ -0.24
Col2a1P28481 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col2a1P28481 Gm7504-201ENSMUST00000201449 424 ntBASIC13.58□□□□□ -0.24
Col2a1P28481 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC13.58□□□□□ -0.24
Col2a1P28481 AC159462.1-201ENSMUST00000214822 687 ntTSL 5 BASIC13.58□□□□□ -0.24
Col2a1P28481 AC132901.1-201ENSMUST00000224345 508 ntBASIC13.58□□□□□ -0.24
Col2a1P28481 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col2a1P28481 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
Col2a1P28481 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col2a1P28481 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col2a1P28481 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Col2a1P28481 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col2a1P28481 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col2a1P28481 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC13.58□□□□□ -0.24
Col2a1P28481 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col2a1P28481 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Cd55b-201ENSMUST00000112488 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Abi2-205ENSMUST00000187709 1671 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Col2a1P28481 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 H2-M3-201ENSMUST00000038580 1438 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC13.57□□□□□ -0.24
Col2a1P28481 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Gm4294-201ENSMUST00000105169 614 ntBASIC13.57□□□□□ -0.24
Col2a1P28481 A230006K03Rik-201ENSMUST00000107533 977 ntTSL 5 BASIC13.57□□□□□ -0.24
Col2a1P28481 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC13.57□□□□□ -0.24
Col2a1P28481 Anp32a-205ENSMUST00000135395 924 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Col2a1P28481 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Mir1956-201ENSMUST00000157748 65 ntBASIC13.57□□□□□ -0.24
Col2a1P28481 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC13.57□□□□□ -0.24
Col2a1P28481 Gm44329-201ENSMUST00000197469 112 ntBASIC13.57□□□□□ -0.24
Col2a1P28481 1700013M08Rik-202ENSMUST00000200080 798 ntBASIC13.57□□□□□ -0.24
Col2a1P28481 Gm35960-201ENSMUST00000202712 767 ntBASIC13.57□□□□□ -0.24
Col2a1P28481 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC13.57□□□□□ -0.24
Col2a1P28481 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC13.57□□□□□ -0.24
Col2a1P28481 Gm46336-201ENSMUST00000221894 279 ntTSL 5 BASIC13.57□□□□□ -0.24
Col2a1P28481 Smco2-201ENSMUST00000032433 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Mrps34-201ENSMUST00000043907 918 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 BC030499-201ENSMUST00000046361 959 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Col2a1P28481 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Col2a1P28481 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Col2a1P28481 Gm17213-201ENSMUST00000165161 1360 ntBASIC13.57□□□□□ -0.24
Col2a1P28481 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC13.57□□□□□ -0.24
Col2a1P28481 Gnrhr-202ENSMUST00000094654 1475 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Gm13384-201ENSMUST00000117166 1344 ntBASIC13.57□□□□□ -0.24
Col2a1P28481 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC13.57□□□□□ -0.24
Col2a1P28481 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col2a1P28481 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms