Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Gm5884-201ENSMUST00000036712 1479 ntBASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Ptprt-203ENSMUST00000109443 12112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Prpf40aQ9R1C7 Gm8038-201ENSMUST00000164674 2044 ntBASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Gm1995-201ENSMUST00000220838 2602 ntBASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Gm17193-201ENSMUST00000116345 691 ntTSL 5 BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Gm23119-201ENSMUST00000158610 140 ntBASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Gm8502-201ENSMUST00000185708 901 ntBASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Gm21147-201ENSMUST00000186046 913 ntBASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Gm8510-201ENSMUST00000189202 895 ntBASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Gm2316-201ENSMUST00000190613 921 ntBASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Ighv1-60-201ENSMUST00000195816 405 ntBASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Gm43179-201ENSMUST00000198797 275 ntBASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Gm8369-201ENSMUST00000079855 1374 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Gm6211-201ENSMUST00000147973 4275 ntBASIC13.4□□□□□ -0.26
Prpf40aQ9R1C7 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
Prpf40aQ9R1C7 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Mir8109-201ENSMUST00000184375 117 ntBASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Gm44364-201ENSMUST00000198368 141 ntBASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Gm43452-201ENSMUST00000201873 991 ntBASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Gm30285-201ENSMUST00000214614 422 ntBASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC13.39□□□□□ -0.27
Prpf40aQ9R1C7 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 301.7 ms