Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Ccpg1-201ENSMUST00000037977 3151 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 4921522P10Rik-201ENSMUST00000048606 2101 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Taok1-202ENSMUST00000058496 12409 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Hyal1-202ENSMUST00000112387 2706 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Ltbp2-201ENSMUST00000002073 6769 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Nos3-201ENSMUST00000030834 4132 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Myh1-201ENSMUST00000018637 5938 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Lsamp-206ENSMUST00000187695 3411 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Tcf4-240ENSMUST00000201781 2779 ntTSL 5 BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Ptprt-204ENSMUST00000109445 12082 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Gm16177-201ENSMUST00000120728 718 ntBASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Mir1982-201ENSMUST00000157368 74 ntBASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Gm6652-201ENSMUST00000186414 1070 ntBASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Gtf3c1-204ENSMUST00000205659 6570 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Alox12-201ENSMUST00000000329 3001 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Eef2k-201ENSMUST00000047875 6580 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ddx28Q9CWT6 Madd-214ENSMUST00000111381 5873 ntAPPRIS ALT2 TSL 2 BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 4631405K08Rik-201ENSMUST00000180420 2112 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Gm6992-201ENSMUST00000217973 1607 ntBASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Gm32828-202ENSMUST00000219198 2111 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Syk-201ENSMUST00000055087 5122 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Dis3l-201ENSMUST00000068367 3605 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Gm37580-201ENSMUST00000192408 2800 ntBASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Dnajc5-203ENSMUST00000108797 3664 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Gm16296-201ENSMUST00000159905 325 ntBASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Gm27682-201ENSMUST00000183930 110 ntBASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ddx28Q9CWT6 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Ints6l-207ENSMUST00000186445 3608 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Gm26642-201ENSMUST00000180981 2782 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 2810404F17Rik-201ENSMUST00000156615 1704 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Ddx28Q9CWT6 Megf8-201ENSMUST00000128119 10040 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 47.5 ms