Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim28Q62318 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim28Q62318 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim28Q62318 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim28Q62318 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Trim28Q62318 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim28Q62318 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim28Q62318 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC15.67■□□□□ 0.1
Trim28Q62318 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Trim28Q62318 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Trim28Q62318 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim28Q62318 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim28Q62318 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim28Q62318 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim28Q62318 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim28Q62318 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim28Q62318 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim28Q62318 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim28Q62318 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim28Q62318 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC15.66■□□□□ 0.1
Trim28Q62318 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim28Q62318 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim28Q62318 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Trim28Q62318 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim28Q62318 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim28Q62318 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC15.66■□□□□ 0.1
Trim28Q62318 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
Trim28Q62318 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC15.66■□□□□ 0.1
Trim28Q62318 Gm15131-201ENSMUST00000119124 595 ntBASIC15.66■□□□□ 0.1
Trim28Q62318 Gm11783-201ENSMUST00000119549 885 ntBASIC15.66■□□□□ 0.1
Trim28Q62318 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC15.66■□□□□ 0.1
Trim28Q62318 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim28Q62318 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim28Q62318 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC15.66■□□□□ 0.1
Trim28Q62318 Cldn16-202ENSMUST00000161053 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim28Q62318 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim28Q62318 Gm19459-201ENSMUST00000176240 835 ntBASIC15.66■□□□□ 0.1
Trim28Q62318 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC15.66■□□□□ 0.1
Trim28Q62318 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim28Q62318 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC15.66■□□□□ 0.1
Trim28Q62318 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC15.66■□□□□ 0.1
Trim28Q62318 Gm45398-201ENSMUST00000210561 165 ntBASIC15.66■□□□□ 0.1
Trim28Q62318 D9Wsu149-201ENSMUST00000214169 594 ntBASIC15.66■□□□□ 0.1
Trim28Q62318 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim28Q62318 Bnip3l-ps-202ENSMUST00000220709 1132 ntBASIC15.66■□□□□ 0.1
Trim28Q62318 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Trim28Q62318 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim28Q62318 Gm37844-201ENSMUST00000192473 4097 ntBASIC15.66■□□□□ 0.1
Trim28Q62318 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim28Q62318 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Trim28Q62318 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim28Q62318 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim28Q62318 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim28Q62318 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim28Q62318 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim28Q62318 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC15.65■□□□□ 0.1
Trim28Q62318 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim28Q62318 Gm5380-201ENSMUST00000119296 2136 ntBASIC15.65■□□□□ 0.1
Trim28Q62318 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trim28Q62318 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim28Q62318 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Trim28Q62318 Gm45003-201ENSMUST00000205875 2158 ntBASIC15.65■□□□□ 0.1
Trim28Q62318 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim28Q62318 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
Trim28Q62318 Gm16166-201ENSMUST00000118291 787 ntBASIC15.65■□□□□ 0.1
Trim28Q62318 Gm12856-201ENSMUST00000119471 1293 ntBASIC15.65■□□□□ 0.1
Trim28Q62318 Gm14585-201ENSMUST00000120713 634 ntBASIC15.65■□□□□ 0.1
Trim28Q62318 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC15.65■□□□□ 0.1
Trim28Q62318 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC15.65■□□□□ 0.1
Trim28Q62318 Gm16036-201ENSMUST00000150385 1112 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trim28Q62318 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim28Q62318 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
Trim28Q62318 Gm5982-201ENSMUST00000196234 512 ntBASIC15.65■□□□□ 0.1
Trim28Q62318 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trim28Q62318 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC15.65■□□□□ 0.1
Trim28Q62318 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim28Q62318 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim28Q62318 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Trim28Q62318 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim28Q62318 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trim28Q62318 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Trim28Q62318 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim28Q62318 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Trim28Q62318 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim28Q62318 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC15.65■□□□□ 0.1
Trim28Q62318 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim28Q62318 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim28Q62318 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim28Q62318 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim28Q62318 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim28Q62318 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim28Q62318 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim28Q62318 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim28Q62318 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Trim28Q62318 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Trim28Q62318 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Trim28Q62318 AC093022.4-203ENSMUST00000228523 2657 ntBASIC15.64■□□□□ 0.09
Trim28Q62318 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Trim28Q62318 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim28Q62318 Nr2f2-202ENSMUST00000089565 1664 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms