Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim41Q5NCC3 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim41Q5NCC3 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim41Q5NCC3 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim41Q5NCC3 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim41Q5NCC3 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Trim41Q5NCC3 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim41Q5NCC3 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim41Q5NCC3 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim41Q5NCC3 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim41Q5NCC3 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim41Q5NCC3 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim41Q5NCC3 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Trim41Q5NCC3 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim41Q5NCC3 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim41Q5NCC3 Gm43677-201ENSMUST00000198098 2378 ntBASIC21.13■□□□□ 0.97
Trim41Q5NCC3 Ighv7-2-201ENSMUST00000103462 354 ntAPPRIS ALT2 BASIC21.13■□□□□ 0.97
Trim41Q5NCC3 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC21.13■□□□□ 0.97
Trim41Q5NCC3 Olfr1233-203ENSMUST00000215469 1205 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Trim41Q5NCC3 Olfr1233-204ENSMUST00000216561 1192 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Trim41Q5NCC3 Cinp-204ENSMUST00000221102 536 ntTSL 2 BASIC21.13■□□□□ 0.97
Trim41Q5NCC3 AC121357.1-201ENSMUST00000227365 608 ntBASIC21.13■□□□□ 0.97
Trim41Q5NCC3 AC106830.1-201ENSMUST00000228032 1003 ntBASIC21.13■□□□□ 0.97
Trim41Q5NCC3 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Trim41Q5NCC3 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim41Q5NCC3 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim41Q5NCC3 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim41Q5NCC3 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC21.12■□□□□ 0.97
Trim41Q5NCC3 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Trim41Q5NCC3 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim41Q5NCC3 Gm21998-201ENSMUST00000117552 1308 ntBASIC21.12■□□□□ 0.97
Trim41Q5NCC3 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim41Q5NCC3 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim41Q5NCC3 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim41Q5NCC3 Gm12813-201ENSMUST00000119615 902 ntBASIC21.12■□□□□ 0.97
Trim41Q5NCC3 Gm34312-201ENSMUST00000204650 1092 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Trim41Q5NCC3 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim41Q5NCC3 Lgi3-203ENSMUST00000226548 1001 ntBASIC21.12■□□□□ 0.97
Trim41Q5NCC3 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim41Q5NCC3 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim41Q5NCC3 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim41Q5NCC3 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim41Q5NCC3 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim41Q5NCC3 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim41Q5NCC3 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim41Q5NCC3 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Gm12419-201ENSMUST00000116649 636 ntBASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Gm14314-201ENSMUST00000118225 1015 ntBASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Cntrobos-201ENSMUST00000132834 383 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Trim41Q5NCC3 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Gm9630-201ENSMUST00000178304 885 ntBASIC21.11■□□□□ 0.97
Trim41Q5NCC3 9330179D12Rik-201ENSMUST00000180569 1105 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Gm36991-201ENSMUST00000191800 648 ntBASIC21.11■□□□□ 0.97
Trim41Q5NCC3 9330118I20Rik-201ENSMUST00000203390 1066 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Gm8956-201ENSMUST00000203939 825 ntBASIC21.11■□□□□ 0.97
Trim41Q5NCC3 4933430L12Rik-201ENSMUST00000206788 1194 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Olfr1460-ps1-201ENSMUST00000208975 899 ntBASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Gm18363-201ENSMUST00000221671 730 ntBASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Gm4604-201ENSMUST00000025040 390 ntBASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim41Q5NCC3 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim41Q5NCC3 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Gm15976-201ENSMUST00000129701 429 ntTSL 3 BASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Ighv1-48-201ENSMUST00000191795 294 ntBASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Gm6905-201ENSMUST00000205729 511 ntBASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Gm18499-201ENSMUST00000220808 1021 ntBASIC21.1■□□□□ 0.97
Trim41Q5NCC3 AC151275.1-201ENSMUST00000224870 585 ntBASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Trim41Q5NCC3 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 114.5 ms