Protein–RNA interactions for Protein: P79621

Ciita, MHC class II transactivator, mousemouse

Predictions only

Length 1,155 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CiitaP79621 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
CiitaP79621 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.31
CiitaP79621 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
CiitaP79621 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC13.14□□□□□ -0.31
CiitaP79621 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
CiitaP79621 AC126257.1-201ENSMUST00000213195 1536 ntBASIC13.14□□□□□ -0.31
CiitaP79621 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
CiitaP79621 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Gm6335-201ENSMUST00000118081 1194 ntBASIC13.14□□□□□ -0.31
CiitaP79621 Gm14724-201ENSMUST00000118400 537 ntBASIC13.14□□□□□ -0.31
CiitaP79621 Gm15004-201ENSMUST00000119192 630 ntBASIC13.14□□□□□ -0.31
CiitaP79621 Gm7816-201ENSMUST00000119884 1194 ntBASIC13.14□□□□□ -0.31
CiitaP79621 Gm15542-201ENSMUST00000121585 1194 ntBASIC13.14□□□□□ -0.31
CiitaP79621 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC13.14□□□□□ -0.31
CiitaP79621 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC13.14□□□□□ -0.31
CiitaP79621 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC13.14□□□□□ -0.31
CiitaP79621 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC13.14□□□□□ -0.31
CiitaP79621 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC13.14□□□□□ -0.31
CiitaP79621 Gm4482-201ENSMUST00000200876 742 ntBASIC13.14□□□□□ -0.31
CiitaP79621 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
CiitaP79621 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC13.14□□□□□ -0.31
CiitaP79621 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Gm42748-201ENSMUST00000199354 2341 ntBASIC13.14□□□□□ -0.31
CiitaP79621 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
CiitaP79621 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CiitaP79621 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CiitaP79621 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
CiitaP79621 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CiitaP79621 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC13.13□□□□□ -0.31
CiitaP79621 Gm5053-201ENSMUST00000208361 1678 ntBASIC13.13□□□□□ -0.31
CiitaP79621 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC13.13□□□□□ -0.31
CiitaP79621 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Gm6580-201ENSMUST00000117504 1357 ntBASIC13.13□□□□□ -0.31
CiitaP79621 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC13.13□□□□□ -0.31
CiitaP79621 Gm12857-201ENSMUST00000117678 592 ntBASIC13.13□□□□□ -0.31
CiitaP79621 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC13.13□□□□□ -0.31
CiitaP79621 Gm8566-201ENSMUST00000120174 465 ntBASIC13.13□□□□□ -0.31
CiitaP79621 Gm15610-201ENSMUST00000120584 195 ntBASIC13.13□□□□□ -0.31
CiitaP79621 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC13.13□□□□□ -0.31
CiitaP79621 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
CiitaP79621 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC13.13□□□□□ -0.31
CiitaP79621 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Gm5733-201ENSMUST00000190232 939 ntBASIC13.13□□□□□ -0.31
CiitaP79621 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC13.13□□□□□ -0.31
CiitaP79621 Gm9797-202ENSMUST00000218003 294 ntBASIC13.13□□□□□ -0.31
CiitaP79621 AC121960.1-201ENSMUST00000227982 564 ntBASIC13.13□□□□□ -0.31
CiitaP79621 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
CiitaP79621 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
CiitaP79621 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CiitaP79621 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CiitaP79621 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
CiitaP79621 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CiitaP79621 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CiitaP79621 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CiitaP79621 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CiitaP79621 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
CiitaP79621 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CiitaP79621 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 63.9 ms