Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm20554-201ENSMUST00000177421 2352 ntBASIC14.34□□□□□ -0.11
Col3a1P08121 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col3a1P08121 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col3a1P08121 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col3a1P08121 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col3a1P08121 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC14.34□□□□□ -0.11
Col3a1P08121 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col3a1P08121 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col3a1P08121 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col3a1P08121 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Col3a1P08121 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Col3a1P08121 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Col3a1P08121 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
Col3a1P08121 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Col3a1P08121 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Col3a1P08121 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Col3a1P08121 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col3a1P08121 Gm25076-201ENSMUST00000104098 132 ntBASIC14.33□□□□□ -0.12
Col3a1P08121 Gm15764-201ENSMUST00000150389 672 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col3a1P08121 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col3a1P08121 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col3a1P08121 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC14.33□□□□□ -0.12
Col3a1P08121 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC14.33□□□□□ -0.12
Col3a1P08121 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col3a1P08121 Olfr1350-201ENSMUST00000070985 927 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Col3a1P08121 Rpl15-201ENSMUST00000079419 883 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
Col3a1P08121 Olfr584-201ENSMUST00000098210 964 ntBASIC14.33□□□□□ -0.12
Col3a1P08121 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col3a1P08121 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC14.33□□□□□ -0.12
Col3a1P08121 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col3a1P08121 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
Col3a1P08121 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col3a1P08121 Gm37269-201ENSMUST00000193906 1891 ntBASIC14.33□□□□□ -0.12
Col3a1P08121 Gm5380-201ENSMUST00000119296 2136 ntBASIC14.33□□□□□ -0.12
Col3a1P08121 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Col3a1P08121 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Col3a1P08121 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col3a1P08121 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col3a1P08121 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col3a1P08121 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col3a1P08121 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col3a1P08121 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC14.33□□□□□ -0.12
Col3a1P08121 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col3a1P08121 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Col3a1P08121 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC14.33□□□□□ -0.12
Col3a1P08121 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col3a1P08121 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col3a1P08121 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col3a1P08121 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col3a1P08121 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Col3a1P08121 Gm11892-201ENSMUST00000117711 1202 ntBASIC14.32□□□□□ -0.12
Col3a1P08121 Gm14199-201ENSMUST00000130021 495 ntTSL 2 BASIC14.32□□□□□ -0.12
Col3a1P08121 Plgrkt-209ENSMUST00000152936 604 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Gm6485-201ENSMUST00000160676 439 ntBASIC14.32□□□□□ -0.12
Col3a1P08121 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Col3a1P08121 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Gm3551-201ENSMUST00000190750 664 ntBASIC14.32□□□□□ -0.12
Col3a1P08121 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC14.32□□□□□ -0.12
Col3a1P08121 Gm37905-201ENSMUST00000195310 341 ntBASIC14.32□□□□□ -0.12
Col3a1P08121 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 CT485606.1-201ENSMUST00000213187 878 ntBASIC14.32□□□□□ -0.12
Col3a1P08121 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC14.32□□□□□ -0.12
Col3a1P08121 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Asna1-201ENSMUST00000064314 1256 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Col3a1P08121 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Col3a1P08121 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Col3a1P08121 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Armcx2-203ENSMUST00000119010 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Nupl1-206ENSMUST00000225111 2936 ntBASIC14.32□□□□□ -0.12
Col3a1P08121 Gm37844-201ENSMUST00000192473 4097 ntBASIC14.32□□□□□ -0.12
Col3a1P08121 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Col3a1P08121 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC14.32□□□□□ -0.12
Col3a1P08121 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Gm15997-201ENSMUST00000202188 1491 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col3a1P08121 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Col3a1P08121 Gm11451-201ENSMUST00000118946 630 ntBASIC14.31□□□□□ -0.12
Col3a1P08121 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC14.31□□□□□ -0.12
Col3a1P08121 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC14.31□□□□□ -0.12
Col3a1P08121 Hsh2d-202ENSMUST00000165324 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col3a1P08121 Coa3-202ENSMUST00000168089 291 ntTSL 3 BASIC14.31□□□□□ -0.12
Col3a1P08121 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col3a1P08121 Gm5982-201ENSMUST00000196234 512 ntBASIC14.31□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms