Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC11.9□□□□□ -0.51
Chd3B1AR17 Gm44126-201ENSMUST00000204831 514 ntBASIC11.9□□□□□ -0.51
Chd3B1AR17 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC11.9□□□□□ -0.51
Chd3B1AR17 Gm6781-201ENSMUST00000038304 1242 ntBASIC11.9□□□□□ -0.51
Chd3B1AR17 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Chd3B1AR17 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.51
Chd3B1AR17 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Chd3B1AR17 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Chd3B1AR17 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Chd3B1AR17 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.51
Chd3B1AR17 Gm43267-201ENSMUST00000199664 1796 ntBASIC11.9□□□□□ -0.51
Chd3B1AR17 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Gm29100-201ENSMUST00000187564 4410 ntBASIC11.89□□□□□ -0.51
Chd3B1AR17 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Gm43447-201ENSMUST00000198471 1535 ntBASIC11.89□□□□□ -0.51
Chd3B1AR17 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
Chd3B1AR17 Gm14150-201ENSMUST00000122404 1354 ntBASIC11.89□□□□□ -0.51
Chd3B1AR17 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC11.89□□□□□ -0.51
Chd3B1AR17 Gm13408-201ENSMUST00000119822 798 ntBASIC11.89□□□□□ -0.51
Chd3B1AR17 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Gm13935-201ENSMUST00000121859 798 ntBASIC11.89□□□□□ -0.51
Chd3B1AR17 n-R5s14-201ENSMUST00000122688 107 ntBASIC11.89□□□□□ -0.51
Chd3B1AR17 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC11.89□□□□□ -0.51
Chd3B1AR17 Gm20426-201ENSMUST00000173657 440 ntBASIC11.89□□□□□ -0.51
Chd3B1AR17 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Chd3B1AR17 Gm28071-201ENSMUST00000190355 478 ntBASIC11.89□□□□□ -0.51
Chd3B1AR17 Gm43378-201ENSMUST00000199336 582 ntBASIC11.89□□□□□ -0.51
Chd3B1AR17 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC11.89□□□□□ -0.51
Chd3B1AR17 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Gm21811-201ENSMUST00000096485 930 ntBASIC11.89□□□□□ -0.51
Chd3B1AR17 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC11.89□□□□□ -0.51
Chd3B1AR17 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
Chd3B1AR17 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC11.89□□□□□ -0.51
Chd3B1AR17 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Chd3B1AR17 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Chd3B1AR17 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Chd3B1AR17 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Chd3B1AR17 Gm22133-201ENSMUST00000102082 109 ntBASIC11.88□□□□□ -0.51
Chd3B1AR17 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC11.88□□□□□ -0.51
Chd3B1AR17 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Chd3B1AR17 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC11.88□□□□□ -0.51
Chd3B1AR17 Ighv1-60-201ENSMUST00000195816 405 ntBASIC11.88□□□□□ -0.51
Chd3B1AR17 Gm18711-201ENSMUST00000199341 750 ntBASIC11.88□□□□□ -0.51
Chd3B1AR17 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Chd3B1AR17 Gm45909-201ENSMUST00000212413 1031 ntBASIC11.88□□□□□ -0.51
Chd3B1AR17 AC154849.4-201ENSMUST00000224868 365 ntBASIC11.88□□□□□ -0.51
Chd3B1AR17 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Chd3B1AR17 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Chd3B1AR17 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Chd3B1AR17 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC11.88□□□□□ -0.51
Chd3B1AR17 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Chd3B1AR17 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Chd3B1AR17 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Chd3B1AR17 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Chd3B1AR17 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Chd3B1AR17 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Chd3B1AR17 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Chd3B1AR17 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Chd3B1AR17 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Chd3B1AR17 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC11.88□□□□□ -0.51
Chd3B1AR17 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Chd3B1AR17 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Chd3B1AR17 AC129931.1-201ENSMUST00000228865 1861 ntBASIC11.88□□□□□ -0.51
Chd3B1AR17 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Chd3B1AR17 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Chd3B1AR17 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Chd3B1AR17 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Chd3B1AR17 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Chd3B1AR17 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Chd3B1AR17 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC11.88□□□□□ -0.51
Chd3B1AR17 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Chd3B1AR17 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC11.88□□□□□ -0.51
Chd3B1AR17 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC11.88□□□□□ -0.51
Chd3B1AR17 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Chd3B1AR17 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Chd3B1AR17 AC154517.2-201ENSMUST00000220829 2458 ntBASIC11.88□□□□□ -0.51
Chd3B1AR17 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC11.88□□□□□ -0.51
Chd3B1AR17 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms