Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Hspa5-201ENSMUST00000028222 3672 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ccdc28bQ8CEG5 Corin-202ENSMUST00000167460 4639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ccdc28bQ8CEG5 Gm26846-201ENSMUST00000181865 4869 ntTSL 5 BASIC12.04□□□□□ -0.48
Ccdc28bQ8CEG5 Gm36940-201ENSMUST00000194281 2036 ntBASIC12.04□□□□□ -0.48
Ccdc28bQ8CEG5 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Ccdc28bQ8CEG5 Tbc1d14-202ENSMUST00000124036 2765 ntTSL 5 BASIC12.04□□□□□ -0.48
Ccdc28bQ8CEG5 Pla2g4b-201ENSMUST00000126150 2790 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Ccdc28bQ8CEG5 Srrt-201ENSMUST00000040873 3024 ntAPPRIS P3 TSL 5 BASIC12.04□□□□□ -0.48
Ccdc28bQ8CEG5 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC12.04□□□□□ -0.48
Ccdc28bQ8CEG5 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Ccdc28bQ8CEG5 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ccdc28bQ8CEG5 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ccdc28bQ8CEG5 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ccdc28bQ8CEG5 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Ccdc28bQ8CEG5 Cdc7-204ENSMUST00000118261 3129 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ccdc28bQ8CEG5 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Ccdc28bQ8CEG5 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
Ccdc28bQ8CEG5 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ccdc28bQ8CEG5 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ccdc28bQ8CEG5 Helq-201ENSMUST00000044684 3689 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ccdc28bQ8CEG5 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Thoc5-201ENSMUST00000038237 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Phactr1-201ENSMUST00000066928 2013 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Gm21136-201ENSMUST00000186812 2575 ntBASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Gm6605-201ENSMUST00000031488 2574 ntBASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Sel1l-210ENSMUST00000178462 6150 ntTSL 5 BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Ntrk3-205ENSMUST00000193002 2678 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Gm9022-201ENSMUST00000182482 992 ntBASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Gm4034-201ENSMUST00000187674 480 ntBASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Gm9124-201ENSMUST00000191789 1092 ntBASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Gm9113-201ENSMUST00000192510 1018 ntBASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Gm9131-201ENSMUST00000193557 1089 ntBASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Gm9121-201ENSMUST00000193749 1071 ntBASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Gm38092-201ENSMUST00000195600 653 ntBASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Gm37497-201ENSMUST00000195830 798 ntBASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Gm44415-201ENSMUST00000204151 2112 ntBASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Nlrp6-203ENSMUST00000183845 4436 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Gpr17-201ENSMUST00000064016 5195 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Vmn1r16-203ENSMUST00000228356 3492 ntAPPRIS ALT2 BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Gm43931-201ENSMUST00000204817 2870 ntBASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Igf1-201ENSMUST00000062862 2292 ntTSL 2 BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 A1cf-202ENSMUST00000224304 2968 ntAPPRIS ALT1 BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ccdc28bQ8CEG5 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Ccdc28bQ8CEG5 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Ccdc28bQ8CEG5 A930038B10Rik-202ENSMUST00000181044 3415 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Ccdc28bQ8CEG5 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Ccdc28bQ8CEG5 Gm5884-201ENSMUST00000036712 1479 ntBASIC12.02□□□□□ -0.48
Ccdc28bQ8CEG5 AL645783.1-201ENSMUST00000221416 1832 ntBASIC12.02□□□□□ -0.48
Ccdc28bQ8CEG5 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC12.02□□□□□ -0.48
Ccdc28bQ8CEG5 Gtf2i-216ENSMUST00000173888 2820 ntTSL 5 BASIC12.02□□□□□ -0.48
Ccdc28bQ8CEG5 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Ccdc28bQ8CEG5 Lig1-211ENSMUST00000177588 3174 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
Ccdc28bQ8CEG5 D6Ertd527e-201ENSMUST00000170124 2161 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Ccdc28bQ8CEG5 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
Ccdc28bQ8CEG5 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Ccdc28bQ8CEG5 Rai2-201ENSMUST00000061514 2204 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Ccdc28bQ8CEG5 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Ccdc28bQ8CEG5 A430033K04Rik-203ENSMUST00000198958 2264 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Ccdc28bQ8CEG5 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ccdc28bQ8CEG5 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ccdc28bQ8CEG5 Irak4-202ENSMUST00000109248 3437 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Ccdc28bQ8CEG5 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Ccdc28bQ8CEG5 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.49
Ccdc28bQ8CEG5 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC12.02□□□□□ -0.49
Ccdc28bQ8CEG5 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC12.02□□□□□ -0.49
Ccdc28bQ8CEG5 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Ccdc28bQ8CEG5 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Ccdc28bQ8CEG5 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC12.02□□□□□ -0.49
Ccdc28bQ8CEG5 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC12.02□□□□□ -0.49
Ccdc28bQ8CEG5 Igkv2-116-201ENSMUST00000199327 362 ntBASIC12.02□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms