Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Brwd1-204ENSMUST00000113829 9843 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.59
Trim40Q3UWA4 Topbp1-201ENSMUST00000035164 5224 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Trim40Q3UWA4 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC11.4□□□□□ -0.59
Trim40Q3UWA4 Lsamp-206ENSMUST00000187695 3411 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
Trim40Q3UWA4 Ophn1-201ENSMUST00000033560 7170 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Fxr1-206ENSMUST00000198051 2127 ntTSL 5 BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Zfp526-201ENSMUST00000055604 3380 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Nphs1-201ENSMUST00000006825 4608 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Ntng1-211ENSMUST00000156177 4652 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Robo4-201ENSMUST00000102895 3226 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Gm45668-201ENSMUST00000211271 493 ntBASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 AC108858.2-201ENSMUST00000228186 1425 ntBASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Ttll10-202ENSMUST00000051509 2304 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Npepps-201ENSMUST00000001480 4215 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Prpf40b-208ENSMUST00000136980 3047 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Gpat3-202ENSMUST00000092990 3035 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Tyk2-203ENSMUST00000214454 4770 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Gm38376-201ENSMUST00000195493 2253 ntBASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Pnpla6-212ENSMUST00000208002 4444 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Rsad1-201ENSMUST00000040487 4143 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 C230014O12Rik-201ENSMUST00000134921 2668 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Mfsd14b-203ENSMUST00000155487 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Itga4-201ENSMUST00000099972 9767 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Egfr-202ENSMUST00000102884 2943 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trim40Q3UWA4 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Fam172a-201ENSMUST00000091459 3892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Tmem161a-201ENSMUST00000002413 3018 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Megf11-201ENSMUST00000068967 6680 ntTSL 2 BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Slc36a4-201ENSMUST00000061568 6539 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Cyp4b1-201ENSMUST00000102707 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Slc26a2-202ENSMUST00000146409 7814 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Zfp46-201ENSMUST00000069195 4639 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Thg1l-201ENSMUST00000011398 2250 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Stab1-201ENSMUST00000036618 7999 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Tef-202ENSMUST00000109553 4401 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Ubxn10-202ENSMUST00000105810 3304 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Gm9816-201ENSMUST00000122292 1414 ntBASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Hdc-201ENSMUST00000028838 2392 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Dtx3l-202ENSMUST00000114885 2648 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC11.38□□□□□ -0.59
Trim40Q3UWA4 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Gm2495-201ENSMUST00000191160 466 ntBASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Gm2423-201ENSMUST00000074863 733 ntBASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC11.38□□□□□ -0.59
Trim40Q3UWA4 Dsc2-201ENSMUST00000039247 4630 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms