Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Ahsa2-202ENSMUST00000109539 3583 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Gm37014-201ENSMUST00000194723 2253 ntBASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Gm6992-201ENSMUST00000217973 1607 ntBASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Gm45776-201ENSMUST00000212366 1522 ntBASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Apbb1-201ENSMUST00000081165 2530 ntAPPRIS ALT1 TSL 5 BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC11.85□□□□□ -0.51
Col28a1Q2UY11 Rbm4b-201ENSMUST00000036744 1783 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Egfem1-202ENSMUST00000119598 2687 ntAPPRIS P4 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Grik3-201ENSMUST00000030676 8973 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Satb2-205ENSMUST00000177424 4694 ntTSL 5 BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Gm11618-201ENSMUST00000117946 267 ntBASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Gm4271-201ENSMUST00000174444 973 ntBASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Gm44882-201ENSMUST00000205702 802 ntBASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Gm18056-201ENSMUST00000207670 568 ntBASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Gm18061-201ENSMUST00000208350 562 ntBASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Gm18063-201ENSMUST00000208529 568 ntBASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Gm18052-201ENSMUST00000208750 559 ntBASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Gm17823-201ENSMUST00000217830 1006 ntBASIC11.84□□□□□ -0.51
Col28a1Q2UY11 AC140406.1-201ENSMUST00000226481 465 ntBASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Gm2128-201ENSMUST00000108009 2560 ntBASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Gm7537-201ENSMUST00000221660 1414 ntBASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Gm35040-201ENSMUST00000206829 5094 ntTSL 2 BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col28a1Q2UY11 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC11.83□□□□□ -0.51
Col28a1Q2UY11 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.51
Col28a1Q2UY11 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Col28a1Q2UY11 Lsg1-201ENSMUST00000117363 3180 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Col28a1Q2UY11 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Col28a1Q2UY11 Tfr2-204ENSMUST00000196471 2839 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Esrp1-201ENSMUST00000043781 3743 ntTSL 5 BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Fen1-202ENSMUST00000116542 2100 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Tunar-201ENSMUST00000180458 3282 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Gm7783-201ENSMUST00000204795 781 ntBASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Adamts14-202ENSMUST00000120336 3645 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms