Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col6a1Q04857 Gm9129-201ENSMUST00000218173 1689 ntBASIC13.47□□□□□ -0.25
Col6a1Q04857 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col6a1Q04857 Gm42480-201ENSMUST00000198434 2595 ntBASIC13.47□□□□□ -0.25
Col6a1Q04857 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Col6a1Q04857 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col6a1Q04857 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col6a1Q04857 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col6a1Q04857 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Col6a1Q04857 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col6a1Q04857 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col6a1Q04857 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC13.47□□□□□ -0.25
Col6a1Q04857 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Col6a1Q04857 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Col6a1Q04857 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC13.47□□□□□ -0.25
Col6a1Q04857 Gm11989-201ENSMUST00000117240 672 ntBASIC13.47□□□□□ -0.25
Col6a1Q04857 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC13.47□□□□□ -0.25
Col6a1Q04857 Gm12816-201ENSMUST00000118069 1212 ntBASIC13.47□□□□□ -0.25
Col6a1Q04857 Gm11362-201ENSMUST00000118838 850 ntBASIC13.47□□□□□ -0.25
Col6a1Q04857 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC13.47□□□□□ -0.25
Col6a1Q04857 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col6a1Q04857 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col6a1Q04857 Gm19891-201ENSMUST00000189771 303 ntBASIC13.47□□□□□ -0.25
Col6a1Q04857 Gm17831-201ENSMUST00000205579 900 ntBASIC13.47□□□□□ -0.25
Col6a1Q04857 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC13.47□□□□□ -0.25
Col6a1Q04857 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC13.47□□□□□ -0.25
Col6a1Q04857 AC156501.1-201ENSMUST00000228219 270 ntBASIC13.47□□□□□ -0.25
Col6a1Q04857 Gm9996-201ENSMUST00000070359 913 ntBASIC13.47□□□□□ -0.25
Col6a1Q04857 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col6a1Q04857 Gm5879-201ENSMUST00000089501 1209 ntBASIC13.47□□□□□ -0.25
Col6a1Q04857 1810009A15Rik-201ENSMUST00000096251 806 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col6a1Q04857 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Col6a1Q04857 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC13.47□□□□□ -0.25
Col6a1Q04857 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col6a1Q04857 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Col6a1Q04857 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col6a1Q04857 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col6a1Q04857 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC13.47□□□□□ -0.25
Col6a1Q04857 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col6a1Q04857 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
Col6a1Q04857 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Col6a1Q04857 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col6a1Q04857 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col6a1Q04857 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col6a1Q04857 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col6a1Q04857 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col6a1Q04857 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col6a1Q04857 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Col6a1Q04857 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Col6a1Q04857 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col6a1Q04857 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col6a1Q04857 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
Col6a1Q04857 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC13.46□□□□□ -0.25
Col6a1Q04857 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col6a1Q04857 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col6a1Q04857 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col6a1Q04857 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col6a1Q04857 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col6a1Q04857 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col6a1Q04857 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
Col6a1Q04857 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col6a1Q04857 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Col6a1Q04857 Ywhaq-ps2-201ENSMUST00000117738 643 ntBASIC13.46□□□□□ -0.25
Col6a1Q04857 Gm14585-201ENSMUST00000120713 634 ntBASIC13.46□□□□□ -0.25
Col6a1Q04857 Gm11246-201ENSMUST00000120880 345 ntBASIC13.46□□□□□ -0.25
Col6a1Q04857 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Col6a1Q04857 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col6a1Q04857 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC13.46□□□□□ -0.25
Col6a1Q04857 Gm5852-201ENSMUST00000194119 1021 ntBASIC13.46□□□□□ -0.25
Col6a1Q04857 Gm5542-201ENSMUST00000195485 1089 ntBASIC13.46□□□□□ -0.25
Col6a1Q04857 Gm3793-201ENSMUST00000204973 672 ntBASIC13.46□□□□□ -0.25
Col6a1Q04857 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC13.46□□□□□ -0.25
Col6a1Q04857 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC13.46□□□□□ -0.25
Col6a1Q04857 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC13.46□□□□□ -0.25
Col6a1Q04857 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col6a1Q04857 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
Col6a1Q04857 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col6a1Q04857 Gm44241-201ENSMUST00000203230 1662 ntBASIC13.46□□□□□ -0.26
Col6a1Q04857 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
Col6a1Q04857 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col6a1Q04857 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col6a1Q04857 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col6a1Q04857 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col6a1Q04857 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col6a1Q04857 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col6a1Q04857 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col6a1Q04857 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col6a1Q04857 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col6a1Q04857 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Col6a1Q04857 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC13.45□□□□□ -0.26
Col6a1Q04857 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC13.45□□□□□ -0.26
Col6a1Q04857 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col6a1Q04857 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC13.45□□□□□ -0.26
Col6a1Q04857 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC13.45□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 62.3 ms