Protein–RNA interactions for Protein: P79621

Ciita, MHC class II transactivator, mousemouse

Predictions only

Length 1,155 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CiitaP79621 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CiitaP79621 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CiitaP79621 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC13.17□□□□□ -0.3
CiitaP79621 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CiitaP79621 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CiitaP79621 Gm10152-201ENSMUST00000193475 1344 ntBASIC13.17□□□□□ -0.3
CiitaP79621 Gm9333-201ENSMUST00000205452 1323 ntBASIC13.17□□□□□ -0.3
CiitaP79621 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CiitaP79621 AC125108.1-201ENSMUST00000218986 2330 ntBASIC13.17□□□□□ -0.3
CiitaP79621 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CiitaP79621 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
CiitaP79621 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC13.17□□□□□ -0.3
CiitaP79621 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC13.17□□□□□ -0.3
CiitaP79621 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CiitaP79621 Gm27530-201ENSMUST00000184096 98 ntBASIC13.17□□□□□ -0.3
CiitaP79621 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC13.17□□□□□ -0.3
CiitaP79621 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CiitaP79621 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CiitaP79621 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CiitaP79621 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CiitaP79621 Gm27194-201ENSMUST00000175753 2936 ntBASIC13.17□□□□□ -0.3
CiitaP79621 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
CiitaP79621 Gm9072-201ENSMUST00000218390 1514 ntBASIC13.17□□□□□ -0.3
CiitaP79621 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CiitaP79621 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CiitaP79621 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CiitaP79621 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
CiitaP79621 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CiitaP79621 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
CiitaP79621 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC13.16□□□□□ -0.3
CiitaP79621 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
CiitaP79621 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CiitaP79621 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CiitaP79621 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CiitaP79621 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC13.16□□□□□ -0.3
CiitaP79621 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CiitaP79621 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CiitaP79621 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CiitaP79621 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CiitaP79621 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC13.16□□□□□ -0.3
CiitaP79621 Gm12196-201ENSMUST00000120954 262 ntBASIC13.16□□□□□ -0.3
CiitaP79621 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC13.16□□□□□ -0.3
CiitaP79621 Ighv1-60-201ENSMUST00000195816 405 ntBASIC13.16□□□□□ -0.3
CiitaP79621 Gm18753-201ENSMUST00000201000 566 ntBASIC13.16□□□□□ -0.3
CiitaP79621 Gm44136-201ENSMUST00000203819 1106 ntBASIC13.16□□□□□ -0.3
CiitaP79621 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC13.16□□□□□ -0.3
CiitaP79621 AC133602.1-201ENSMUST00000227510 509 ntBASIC13.16□□□□□ -0.3
CiitaP79621 Gm5705-201ENSMUST00000066241 711 ntBASIC13.16□□□□□ -0.3
CiitaP79621 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
CiitaP79621 Mir219a-1-201ENSMUST00000083621 110 ntBASIC13.16□□□□□ -0.3
CiitaP79621 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CiitaP79621 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CiitaP79621 Gm43267-201ENSMUST00000199664 1796 ntBASIC13.16□□□□□ -0.3
CiitaP79621 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
CiitaP79621 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CiitaP79621 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CiitaP79621 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CiitaP79621 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC13.16□□□□□ -0.3
CiitaP79621 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CiitaP79621 Gm14132-201ENSMUST00000117188 1719 ntBASIC13.16□□□□□ -0.3
CiitaP79621 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CiitaP79621 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CiitaP79621 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CiitaP79621 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CiitaP79621 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CiitaP79621 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
CiitaP79621 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC13.15□□□□□ -0.3
CiitaP79621 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CiitaP79621 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC13.15□□□□□ -0.3
CiitaP79621 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CiitaP79621 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CiitaP79621 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CiitaP79621 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CiitaP79621 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CiitaP79621 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CiitaP79621 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC13.15□□□□□ -0.3
CiitaP79621 Gm13035-201ENSMUST00000117496 342 ntBASIC13.15□□□□□ -0.3
CiitaP79621 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CiitaP79621 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC13.15□□□□□ -0.3
CiitaP79621 Gm25881-201ENSMUST00000157783 103 ntBASIC13.15□□□□□ -0.3
CiitaP79621 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC13.15□□□□□ -0.3
CiitaP79621 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC13.15□□□□□ -0.3
CiitaP79621 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CiitaP79621 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC13.15□□□□□ -0.3
CiitaP79621 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC13.15□□□□□ -0.3
CiitaP79621 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC13.15□□□□□ -0.3
CiitaP79621 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC13.15□□□□□ -0.3
CiitaP79621 Nsd1-205ENSMUST00000224693 852 ntBASIC13.15□□□□□ -0.3
CiitaP79621 Gm807-202ENSMUST00000224929 408 ntBASIC13.15□□□□□ -0.3
CiitaP79621 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CiitaP79621 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CiitaP79621 Gm21811-201ENSMUST00000096485 930 ntBASIC13.15□□□□□ -0.3
CiitaP79621 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CiitaP79621 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CiitaP79621 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CiitaP79621 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CiitaP79621 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
CiitaP79621 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
CiitaP79621 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.31
CiitaP79621 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms