Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Gm13570-201ENSMUST00000140763 309 ntBASIC13.43□□□□□ -0.26
Hmgb1P63158 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb1P63158 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb1P63158 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
Hmgb1P63158 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb1P63158 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb1P63158 Gm42693-201ENSMUST00000196779 631 ntBASIC13.43□□□□□ -0.26
Hmgb1P63158 AC154462.2-201ENSMUST00000227519 370 ntBASIC13.43□□□□□ -0.26
Hmgb1P63158 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb1P63158 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb1P63158 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb1P63158 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
Hmgb1P63158 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb1P63158 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Hmgb1P63158 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb1P63158 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb1P63158 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb1P63158 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb1P63158 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Hmgb1P63158 Nedd9-202ENSMUST00000163623 4626 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb1P63158 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb1P63158 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb1P63158 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb1P63158 Dctn4-202ENSMUST00000223590 1530 ntBASIC13.43□□□□□ -0.26
Hmgb1P63158 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb1P63158 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb1P63158 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC13.43□□□□□ -0.26
Hmgb1P63158 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Hmgb1P63158 Gm2673-201ENSMUST00000120958 1608 ntBASIC13.42□□□□□ -0.26
Hmgb1P63158 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb1P63158 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb1P63158 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb1P63158 Paupar-201ENSMUST00000194826 3482 ntBASIC13.42□□□□□ -0.26
Hmgb1P63158 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb1P63158 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb1P63158 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb1P63158 Gm10434-201ENSMUST00000101158 471 ntBASIC13.42□□□□□ -0.26
Hmgb1P63158 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb1P63158 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb1P63158 Gm13323-201ENSMUST00000120245 1151 ntBASIC13.42□□□□□ -0.26
Hmgb1P63158 Gm8908-201ENSMUST00000121633 1024 ntBASIC13.42□□□□□ -0.26
Hmgb1P63158 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC13.42□□□□□ -0.26
Hmgb1P63158 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb1P63158 Gm8565-201ENSMUST00000183259 1014 ntBASIC13.42□□□□□ -0.26
Hmgb1P63158 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC13.42□□□□□ -0.26
Hmgb1P63158 Dhrs4-202ENSMUST00000226168 828 ntBASIC13.42□□□□□ -0.26
Hmgb1P63158 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb1P63158 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb1P63158 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC13.42□□□□□ -0.26
Hmgb1P63158 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb1P63158 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Hmgb1P63158 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb1P63158 Mroh7-201ENSMUST00000106770 4346 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Hmgb1P63158 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb1P63158 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb1P63158 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC13.42□□□□□ -0.26
Hmgb1P63158 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb1P63158 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb1P63158 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb1P63158 Dennd4c-202ENSMUST00000082026 7940 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Hmgb1P63158 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb1P63158 Dhx30-212ENSMUST00000197928 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb1P63158 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb1P63158 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Hmgb1P63158 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb1P63158 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb1P63158 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb1P63158 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb1P63158 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb1P63158 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb1P63158 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb1P63158 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb1P63158 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb1P63158 Gm29100-201ENSMUST00000187564 4410 ntBASIC13.41□□□□□ -0.26
Hmgb1P63158 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Hmgb1P63158 Gm43174-201ENSMUST00000195914 2445 ntBASIC13.41□□□□□ -0.26
Hmgb1P63158 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb1P63158 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC13.41□□□□□ -0.26
Hmgb1P63158 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb1P63158 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC13.41□□□□□ -0.26
Hmgb1P63158 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Hmgb1P63158 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb1P63158 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb1P63158 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Hmgb1P63158 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb1P63158 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb1P63158 Gm24934-201ENSMUST00000103764 111 ntBASIC13.41□□□□□ -0.26
Hmgb1P63158 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb1P63158 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb1P63158 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb1P63158 Gm15824-201ENSMUST00000119516 955 ntBASIC13.41□□□□□ -0.26
Hmgb1P63158 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC13.41□□□□□ -0.26
Hmgb1P63158 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
Hmgb1P63158 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC13.41□□□□□ -0.26
Hmgb1P63158 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb1P63158 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC13.41□□□□□ -0.26
Hmgb1P63158 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb1P63158 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC13.41□□□□□ -0.26
Hmgb1P63158 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Hmgb1P63158 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC13.41□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms