Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC13.15□□□□□ -0.3
RaraP11416 Gm45784-201ENSMUST00000188360 142 ntBASIC13.15□□□□□ -0.3
RaraP11416 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC13.15□□□□□ -0.3
RaraP11416 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC13.15□□□□□ -0.3
RaraP11416 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC13.15□□□□□ -0.3
RaraP11416 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RaraP11416 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RaraP11416 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RaraP11416 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
RaraP11416 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
RaraP11416 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
RaraP11416 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
RaraP11416 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RaraP11416 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RaraP11416 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RaraP11416 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
RaraP11416 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
RaraP11416 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RaraP11416 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC13.15□□□□□ -0.31
RaraP11416 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.31
RaraP11416 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
RaraP11416 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
RaraP11416 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
RaraP11416 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Gm6189-201ENSMUST00000164487 2082 ntBASIC13.14□□□□□ -0.31
RaraP11416 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Gm2673-201ENSMUST00000120958 1608 ntBASIC13.14□□□□□ -0.31
RaraP11416 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC13.14□□□□□ -0.31
RaraP11416 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Osbp2-201ENSMUST00000070552 4097 ntAPPRIS P3 TSL 5 BASIC13.14□□□□□ -0.31
RaraP11416 Olfr56-202ENSMUST00000102785 1930 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
RaraP11416 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
RaraP11416 Gm13376-201ENSMUST00000128743 448 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC13.14□□□□□ -0.31
RaraP11416 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Gm5745-201ENSMUST00000183748 313 ntBASIC13.14□□□□□ -0.31
RaraP11416 Gm9136-201ENSMUST00000193368 454 ntBASIC13.14□□□□□ -0.31
RaraP11416 Gm37748-201ENSMUST00000194379 1140 ntBASIC13.14□□□□□ -0.31
RaraP11416 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 AC154462.2-201ENSMUST00000227519 370 ntBASIC13.14□□□□□ -0.31
RaraP11416 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
RaraP11416 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC13.14□□□□□ -0.31
RaraP11416 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
RaraP11416 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
RaraP11416 Gm37131-201ENSMUST00000192502 1561 ntBASIC13.14□□□□□ -0.31
RaraP11416 Adgrg5-201ENSMUST00000074570 2802 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Lrrn1-201ENSMUST00000049285 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
RaraP11416 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RaraP11416 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RaraP11416 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC13.13□□□□□ -0.31
RaraP11416 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RaraP11416 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
RaraP11416 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RaraP11416 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RaraP11416 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
RaraP11416 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
RaraP11416 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
RaraP11416 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC13.13□□□□□ -0.31
RaraP11416 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RaraP11416 Gm23912-201ENSMUST00000104687 87 ntBASIC13.13□□□□□ -0.31
RaraP11416 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
RaraP11416 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC13.13□□□□□ -0.31
RaraP11416 Gm15172-201ENSMUST00000118945 1046 ntBASIC13.13□□□□□ -0.31
RaraP11416 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
RaraP11416 Gm27514-201ENSMUST00000183692 110 ntBASIC13.13□□□□□ -0.31
RaraP11416 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC13.13□□□□□ -0.31
RaraP11416 Gm5850-201ENSMUST00000192923 1206 ntBASIC13.13□□□□□ -0.31
RaraP11416 Gm38158-201ENSMUST00000194617 339 ntBASIC13.13□□□□□ -0.31
RaraP11416 Gm37008-201ENSMUST00000195712 319 ntBASIC13.13□□□□□ -0.31
RaraP11416 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC13.13□□□□□ -0.31
RaraP11416 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC13.13□□□□□ -0.31
RaraP11416 Gm17823-201ENSMUST00000217830 1006 ntBASIC13.13□□□□□ -0.31
RaraP11416 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RaraP11416 Gm11361-201ENSMUST00000223428 607 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
RaraP11416 AC140451.2-201ENSMUST00000228030 664 ntBASIC13.13□□□□□ -0.31
RaraP11416 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms