Protein–RNA interactions for Protein: P06804

Tnf, Tumor necrosis factor, mousemouse

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TnfP06804 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
TnfP06804 AC126257.1-201ENSMUST00000213195 1536 ntBASIC12.89□□□□□ -0.35
TnfP06804 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
TnfP06804 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
TnfP06804 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
TnfP06804 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
TnfP06804 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
TnfP06804 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
TnfP06804 Gm13035-201ENSMUST00000117496 342 ntBASIC12.89□□□□□ -0.35
TnfP06804 Gm12857-201ENSMUST00000117678 592 ntBASIC12.89□□□□□ -0.35
TnfP06804 Gm9062-201ENSMUST00000117712 727 ntBASIC12.89□□□□□ -0.35
TnfP06804 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC12.89□□□□□ -0.35
TnfP06804 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
TnfP06804 Gm28686-201ENSMUST00000187404 609 ntBASIC12.89□□□□□ -0.35
TnfP06804 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
TnfP06804 Gm44124-201ENSMUST00000204159 472 ntBASIC12.89□□□□□ -0.35
TnfP06804 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC12.89□□□□□ -0.35
TnfP06804 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
TnfP06804 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
TnfP06804 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
TnfP06804 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
TnfP06804 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
TnfP06804 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
TnfP06804 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
TnfP06804 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC12.89□□□□□ -0.35
TnfP06804 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
TnfP06804 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
TnfP06804 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
TnfP06804 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
TnfP06804 Gm10152-201ENSMUST00000193475 1344 ntBASIC12.88□□□□□ -0.35
TnfP06804 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
TnfP06804 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
TnfP06804 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC12.88□□□□□ -0.35
TnfP06804 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC12.88□□□□□ -0.35
TnfP06804 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
TnfP06804 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
TnfP06804 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
TnfP06804 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
TnfP06804 Gm37391-201ENSMUST00000194891 2318 ntBASIC12.88□□□□□ -0.35
TnfP06804 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
TnfP06804 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC12.88□□□□□ -0.35
TnfP06804 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
TnfP06804 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
TnfP06804 Gm13611-201ENSMUST00000118269 318 ntBASIC12.88□□□□□ -0.35
TnfP06804 Gm15610-201ENSMUST00000120584 195 ntBASIC12.88□□□□□ -0.35
TnfP06804 Gm5706-201ENSMUST00000181525 993 ntBASIC12.88□□□□□ -0.35
TnfP06804 Gm5733-201ENSMUST00000190232 939 ntBASIC12.88□□□□□ -0.35
TnfP06804 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
TnfP06804 Gm37986-201ENSMUST00000193285 383 ntBASIC12.88□□□□□ -0.35
TnfP06804 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
TnfP06804 Gm44100-201ENSMUST00000204329 436 ntBASIC12.88□□□□□ -0.35
TnfP06804 Gm9797-202ENSMUST00000218003 294 ntBASIC12.88□□□□□ -0.35
TnfP06804 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
TnfP06804 Gm5705-201ENSMUST00000066241 711 ntBASIC12.88□□□□□ -0.35
TnfP06804 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
TnfP06804 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC12.88□□□□□ -0.35
TnfP06804 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
TnfP06804 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
TnfP06804 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
TnfP06804 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
TnfP06804 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
TnfP06804 Gm43447-201ENSMUST00000198471 1535 ntBASIC12.88□□□□□ -0.35
TnfP06804 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
TnfP06804 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
TnfP06804 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
TnfP06804 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
TnfP06804 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
TnfP06804 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
TnfP06804 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
TnfP06804 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC12.87□□□□□ -0.35
TnfP06804 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
TnfP06804 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
TnfP06804 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
TnfP06804 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
TnfP06804 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
TnfP06804 Gm6580-201ENSMUST00000117504 1357 ntBASIC12.87□□□□□ -0.35
TnfP06804 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
TnfP06804 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
TnfP06804 Gm6335-201ENSMUST00000118081 1194 ntBASIC12.87□□□□□ -0.35
TnfP06804 Gm7816-201ENSMUST00000119884 1194 ntBASIC12.87□□□□□ -0.35
TnfP06804 Gm15542-201ENSMUST00000121585 1194 ntBASIC12.87□□□□□ -0.35
TnfP06804 Gm22902-201ENSMUST00000158488 302 ntBASIC12.87□□□□□ -0.35
TnfP06804 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC12.87□□□□□ -0.35
TnfP06804 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC12.87□□□□□ -0.35
TnfP06804 Gm27530-201ENSMUST00000184096 98 ntBASIC12.87□□□□□ -0.35
TnfP06804 Gm28375-201ENSMUST00000185304 430 ntTSL 3 BASIC12.87□□□□□ -0.35
TnfP06804 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
TnfP06804 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC12.87□□□□□ -0.35
TnfP06804 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
TnfP06804 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
TnfP06804 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
TnfP06804 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
TnfP06804 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
TnfP06804 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
TnfP06804 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
TnfP06804 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
TnfP06804 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
TnfP06804 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
TnfP06804 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
TnfP06804 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 62 ms