Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC14.22□□□□□ -0.13
Scn11aQ9R053 1700122E12Rik-202ENSMUST00000147538 479 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Gm42599-201ENSMUST00000201308 469 ntBASIC14.22□□□□□ -0.13
Scn11aQ9R053 Gm8574-201ENSMUST00000203207 924 ntBASIC14.22□□□□□ -0.13
Scn11aQ9R053 Mrnip-201ENSMUST00000020647 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Gm18204-201ENSMUST00000209835 793 ntBASIC14.22□□□□□ -0.13
Scn11aQ9R053 Nps-202ENSMUST00000210697 1082 ntTSL 5 BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Arhgef33-210ENSMUST00000225548 456 ntBASIC14.22□□□□□ -0.13
Scn11aQ9R053 AC093022.4-203ENSMUST00000228523 2657 ntBASIC14.22□□□□□ -0.13
Scn11aQ9R053 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Slc10a1-203ENSMUST00000218342 1411 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn11aQ9R053 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Gm14274-201ENSMUST00000117182 615 ntBASIC14.22□□□□□ -0.13
Scn11aQ9R053 Smim11-202ENSMUST00000118064 782 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Gm14314-201ENSMUST00000118225 1015 ntBASIC14.22□□□□□ -0.13
Scn11aQ9R053 BB557941-201ENSMUST00000126549 1097 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Gm15523-201ENSMUST00000160463 439 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Scn11aQ9R053 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC14.22□□□□□ -0.13
Scn11aQ9R053 Gm28388-201ENSMUST00000186262 437 ntBASIC14.22□□□□□ -0.13
Scn11aQ9R053 Gm5982-201ENSMUST00000196234 512 ntBASIC14.22□□□□□ -0.13
Scn11aQ9R053 Gm18463-201ENSMUST00000207258 474 ntBASIC14.22□□□□□ -0.13
Scn11aQ9R053 Gm6108-201ENSMUST00000208365 367 ntBASIC14.22□□□□□ -0.13
Scn11aQ9R053 AC120394.2-201ENSMUST00000213905 702 ntTSL 5 BASIC14.22□□□□□ -0.13
Scn11aQ9R053 AC165260.2-203ENSMUST00000224237 336 ntBASIC14.22□□□□□ -0.13
Scn11aQ9R053 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Scn11aQ9R053 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Scn11aQ9R053 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Scn11aQ9R053 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Scn11aQ9R053 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Scn11aQ9R053 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Scn11aQ9R053 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Scn11aQ9R053 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Scn11aQ9R053 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
Scn11aQ9R053 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.13
Scn11aQ9R053 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Scn11aQ9R053 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Scn11aQ9R053 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Scn11aQ9R053 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Scn11aQ9R053 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Scn11aQ9R053 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Scn11aQ9R053 Gm23272-201ENSMUST00000104053 129 ntBASIC14.21□□□□□ -0.13
Scn11aQ9R053 Gm15374-201ENSMUST00000119313 844 ntBASIC14.21□□□□□ -0.13
Scn11aQ9R053 Gm12516-201ENSMUST00000120819 385 ntBASIC14.21□□□□□ -0.13
Scn11aQ9R053 Gm13182-201ENSMUST00000122241 312 ntBASIC14.21□□□□□ -0.13
Scn11aQ9R053 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Scn11aQ9R053 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Scn11aQ9R053 Gm4654-201ENSMUST00000183305 982 ntBASIC14.21□□□□□ -0.13
Scn11aQ9R053 Mir8093-201ENSMUST00000185043 137 ntBASIC14.21□□□□□ -0.13
Scn11aQ9R053 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Scn11aQ9R053 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Scn11aQ9R053 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
Scn11aQ9R053 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Scn11aQ9R053 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.14
Scn11aQ9R053 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Scn11aQ9R053 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Scn11aQ9R053 4930465M20Rik-201ENSMUST00000130564 1446 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Atp6v1g2-202ENSMUST00000118384 483 ntTSL 2 BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Gm14219-201ENSMUST00000120414 288 ntBASIC14.2□□□□□ -0.14
Scn11aQ9R053 Gm7150-201ENSMUST00000122032 981 ntBASIC14.2□□□□□ -0.14
Scn11aQ9R053 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Gm37981-201ENSMUST00000194280 535 ntBASIC14.2□□□□□ -0.14
Scn11aQ9R053 Gm5340-201ENSMUST00000203733 880 ntBASIC14.2□□□□□ -0.14
Scn11aQ9R053 Gm44158-201ENSMUST00000203881 505 ntBASIC14.2□□□□□ -0.14
Scn11aQ9R053 Gm8342-201ENSMUST00000209839 757 ntBASIC14.2□□□□□ -0.14
Scn11aQ9R053 Gm13539-202ENSMUST00000211245 552 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Scn11aQ9R053 AC113082.1-201ENSMUST00000217324 327 ntBASIC14.2□□□□□ -0.14
Scn11aQ9R053 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Scn11aQ9R053 Gm15784-201ENSMUST00000120260 1462 ntBASIC14.2□□□□□ -0.14
Scn11aQ9R053 Ecsit-203ENSMUST00000179422 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 223.2 ms