Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC11.12□□□□□ -0.63
Usf1Q61069 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Usf1Q61069 Prkaca-202ENSMUST00000211558 1399 ntTSL 5 BASIC11.12□□□□□ -0.63
Usf1Q61069 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Usf1Q61069 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Usf1Q61069 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Usf1Q61069 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Usf1Q61069 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Usf1Q61069 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Usf1Q61069 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Usf1Q61069 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Usf1Q61069 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC11.11□□□□□ -0.63
Usf1Q61069 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC11.11□□□□□ -0.63
Usf1Q61069 Sln-201ENSMUST00000048485 1318 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC11.11□□□□□ -0.63
Usf1Q61069 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Arl6ip5-201ENSMUST00000044681 1442 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Gm43858-201ENSMUST00000199418 1778 ntBASIC11.11□□□□□ -0.63
Usf1Q61069 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Usf1Q61069 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Gm16071-201ENSMUST00000119589 793 ntBASIC11.11□□□□□ -0.63
Usf1Q61069 Gm13830-203ENSMUST00000148916 247 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC11.11□□□□□ -0.63
Usf1Q61069 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Usf1Q61069 Gm17826-201ENSMUST00000189720 798 ntBASIC11.11□□□□□ -0.63
Usf1Q61069 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC11.11□□□□□ -0.63
Usf1Q61069 Gm17889-201ENSMUST00000198410 598 ntBASIC11.11□□□□□ -0.63
Usf1Q61069 Gm45338-204ENSMUST00000210658 1105 ntTSL 5 BASIC11.11□□□□□ -0.63
Usf1Q61069 Scg5-201ENSMUST00000024005 1208 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Usf1Q61069 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Pbx1-205ENSMUST00000176540 6876 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC11.11□□□□□ -0.63
Usf1Q61069 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC11.11□□□□□ -0.63
Usf1Q61069 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Usf1Q61069 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Usf1Q61069 Gm44065-201ENSMUST00000203184 3527 ntBASIC11.1□□□□□ -0.63
Usf1Q61069 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC11.1□□□□□ -0.63
Usf1Q61069 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC11.1□□□□□ -0.63
Usf1Q61069 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Usf1Q61069 Gm44401-201ENSMUST00000204462 2375 ntBASIC11.1□□□□□ -0.63
Usf1Q61069 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC11.1□□□□□ -0.63
Usf1Q61069 Mir1956-201ENSMUST00000157748 65 ntBASIC11.1□□□□□ -0.63
Usf1Q61069 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC11.1□□□□□ -0.63
Usf1Q61069 Gm43520-201ENSMUST00000197996 164 ntBASIC11.1□□□□□ -0.63
Usf1Q61069 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC11.1□□□□□ -0.63
Usf1Q61069 Gm2875-201ENSMUST00000211333 360 ntBASIC11.1□□□□□ -0.63
Usf1Q61069 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Usf1Q61069 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Usf1Q61069 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 AC137842.1-201ENSMUST00000227896 2064 ntBASIC11.1□□□□□ -0.63
Usf1Q61069 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Usf1Q61069 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Usf1Q61069 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Usf1Q61069 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms