Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 AC154252.2-201ENSMUST00000223593 767 ntBASIC13.5□□□□□ -0.25
Col6a1Q04857 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col6a1Q04857 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Col6a1Q04857 mt-Rnr1-201ENSMUST00000082388 955 ntBASIC13.5□□□□□ -0.25
Col6a1Q04857 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col6a1Q04857 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Col6a1Q04857 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col6a1Q04857 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Col6a1Q04857 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col6a1Q04857 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Col6a1Q04857 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col6a1Q04857 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col6a1Q04857 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col6a1Q04857 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col6a1Q04857 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col6a1Q04857 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col6a1Q04857 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col6a1Q04857 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Col6a1Q04857 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col6a1Q04857 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Col6a1Q04857 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Col6a1Q04857 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col6a1Q04857 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
Col6a1Q04857 Ccl27a-204ENSMUST00000108035 731 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col6a1Q04857 Ccl27a-205ENSMUST00000108036 841 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
Col6a1Q04857 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
Col6a1Q04857 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC13.49□□□□□ -0.25
Col6a1Q04857 Gm15573-201ENSMUST00000119487 540 ntBASIC13.49□□□□□ -0.25
Col6a1Q04857 Gm12899-201ENSMUST00000120565 551 ntBASIC13.49□□□□□ -0.25
Col6a1Q04857 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC13.49□□□□□ -0.25
Col6a1Q04857 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC13.49□□□□□ -0.25
Col6a1Q04857 Gm6771-201ENSMUST00000182716 1001 ntBASIC13.49□□□□□ -0.25
Col6a1Q04857 Mir6998-201ENSMUST00000183343 64 ntBASIC13.49□□□□□ -0.25
Col6a1Q04857 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC13.49□□□□□ -0.25
Col6a1Q04857 Gm29187-201ENSMUST00000186681 689 ntTSL 3 BASIC13.49□□□□□ -0.25
Col6a1Q04857 1700081H04Rik-201ENSMUST00000190550 1128 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Col6a1Q04857 Gm19931-201ENSMUST00000198920 368 ntBASIC13.49□□□□□ -0.25
Col6a1Q04857 Diablo-210ENSMUST00000200247 748 ntTSL 5 BASIC13.49□□□□□ -0.25
Col6a1Q04857 AC171241.1-201ENSMUST00000228144 1166 ntBASIC13.49□□□□□ -0.25
Col6a1Q04857 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC13.49□□□□□ -0.25
Col6a1Q04857 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Col6a1Q04857 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col6a1Q04857 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Col6a1Q04857 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col6a1Q04857 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col6a1Q04857 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col6a1Q04857 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Col6a1Q04857 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col6a1Q04857 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col6a1Q04857 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC13.49□□□□□ -0.25
Col6a1Q04857 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col6a1Q04857 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Col6a1Q04857 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Col6a1Q04857 Gm20554-201ENSMUST00000177421 2352 ntBASIC13.49□□□□□ -0.25
Col6a1Q04857 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Col6a1Q04857 Gm18626-201ENSMUST00000221512 1409 ntBASIC13.48□□□□□ -0.25
Col6a1Q04857 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 Gm21998-201ENSMUST00000117552 1308 ntBASIC13.48□□□□□ -0.25
Col6a1Q04857 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 Gm24891-201ENSMUST00000104391 136 ntBASIC13.48□□□□□ -0.25
Col6a1Q04857 Serf2-202ENSMUST00000110615 876 ntTSL 2 BASIC13.48□□□□□ -0.25
Col6a1Q04857 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 Gm23218-201ENSMUST00000158124 276 ntBASIC13.48□□□□□ -0.25
Col6a1Q04857 Gm6397-201ENSMUST00000161973 1069 ntBASIC13.48□□□□□ -0.25
Col6a1Q04857 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Col6a1Q04857 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC13.48□□□□□ -0.25
Col6a1Q04857 Gm11634-202ENSMUST00000209862 573 ntAPPRIS P5 TSL 5 BASIC13.48□□□□□ -0.25
Col6a1Q04857 Gm6867-201ENSMUST00000219165 425 ntBASIC13.48□□□□□ -0.25
Col6a1Q04857 Gm7551-201ENSMUST00000089593 1074 ntBASIC13.48□□□□□ -0.25
Col6a1Q04857 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC13.48□□□□□ -0.25
Col6a1Q04857 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC13.48□□□□□ -0.25
Col6a1Q04857 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC13.48□□□□□ -0.25
Col6a1Q04857 Gm43463-201ENSMUST00000195967 1803 ntBASIC13.48□□□□□ -0.25
Col6a1Q04857 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC13.48□□□□□ -0.25
Col6a1Q04857 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col6a1Q04857 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC13.48□□□□□ -0.25
Col6a1Q04857 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC13.47□□□□□ -0.25
Col6a1Q04857 Olfr667-202ENSMUST00000217177 2695 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Col6a1Q04857 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC13.47□□□□□ -0.25
Col6a1Q04857 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col6a1Q04857 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 67.2 ms