Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Gm22133-201ENSMUST00000102082 109 ntBASIC14.15□□□□□ -0.14
Traf1P39428 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC14.15□□□□□ -0.14
Traf1P39428 Gm12566-201ENSMUST00000121479 359 ntBASIC14.15□□□□□ -0.14
Traf1P39428 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC14.15□□□□□ -0.14
Traf1P39428 Gm5616-201ENSMUST00000165252 384 ntBASIC14.15□□□□□ -0.14
Traf1P39428 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Traf1P39428 Gm8741-201ENSMUST00000174736 384 ntBASIC14.15□□□□□ -0.14
Traf1P39428 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC14.15□□□□□ -0.14
Traf1P39428 Gm37666-201ENSMUST00000194110 866 ntBASIC14.15□□□□□ -0.14
Traf1P39428 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Gm43378-201ENSMUST00000199336 582 ntBASIC14.15□□□□□ -0.14
Traf1P39428 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC14.15□□□□□ -0.14
Traf1P39428 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC14.15□□□□□ -0.14
Traf1P39428 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC14.15□□□□□ -0.14
Traf1P39428 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Traf1P39428 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Traf1P39428 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Traf1P39428 Pex26-202ENSMUST00000118234 3778 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Traf1P39428 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
Traf1P39428 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Traf1P39428 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Traf1P39428 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC14.14□□□□□ -0.15
Traf1P39428 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
Traf1P39428 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC14.14□□□□□ -0.15
Traf1P39428 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Gm37437-201ENSMUST00000194451 1937 ntBASIC14.14□□□□□ -0.15
Traf1P39428 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
Traf1P39428 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC14.14□□□□□ -0.15
Traf1P39428 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC14.14□□□□□ -0.15
Traf1P39428 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC14.14□□□□□ -0.15
Traf1P39428 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Traf1P39428 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Traf1P39428 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC14.14□□□□□ -0.15
Traf1P39428 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Traf1P39428 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC14.14□□□□□ -0.15
Traf1P39428 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC14.14□□□□□ -0.15
Traf1P39428 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Traf1P39428 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Traf1P39428 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Traf1P39428 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Traf1P39428 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Traf1P39428 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Traf1P39428 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Traf1P39428 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC14.13□□□□□ -0.15
Traf1P39428 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC14.13□□□□□ -0.15
Traf1P39428 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC14.13□□□□□ -0.15
Traf1P39428 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Traf1P39428 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC14.13□□□□□ -0.15
Traf1P39428 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Traf1P39428 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC14.13□□□□□ -0.15
Traf1P39428 Gm23949-201ENSMUST00000104027 127 ntBASIC14.13□□□□□ -0.15
Traf1P39428 Gm23912-201ENSMUST00000104687 87 ntBASIC14.13□□□□□ -0.15
Traf1P39428 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC14.13□□□□□ -0.15
Traf1P39428 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Traf1P39428 Gm25732-201ENSMUST00000175168 60 ntBASIC14.13□□□□□ -0.15
Traf1P39428 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC14.13□□□□□ -0.15
Traf1P39428 Ighv4-2-201ENSMUST00000192975 362 ntBASIC14.13□□□□□ -0.15
Traf1P39428 Gm18038-201ENSMUST00000197900 485 ntBASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 47.9 ms