Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col18a1P39061 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
Col18a1P39061 Psmc1-201ENSMUST00000021595 1591 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col18a1P39061 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col18a1P39061 Gm27196-201ENSMUST00000184787 2582 ntBASIC15.73■□□□□ 0.11
Col18a1P39061 Gm11413-201ENSMUST00000155822 1461 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Col18a1P39061 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 Selenbp2-204ENSMUST00000173849 1323 ntTSL 5 BASIC15.73■□□□□ 0.11
Col18a1P39061 Dync1i2-208ENSMUST00000112144 2565 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
Col18a1P39061 Gm14740-201ENSMUST00000118538 1150 ntBASIC15.73■□□□□ 0.11
Col18a1P39061 H2afb3-201ENSMUST00000122050 348 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Col18a1P39061 Gm13290-201ENSMUST00000177806 968 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Col18a1P39061 Gm27003-201ENSMUST00000182590 497 ntTSL 5 BASIC15.73■□□□□ 0.11
Col18a1P39061 Chordc1-202ENSMUST00000213605 519 ntTSL 2 BASIC15.73■□□□□ 0.11
Col18a1P39061 4930546C10Rik-201ENSMUST00000025428 363 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Col18a1P39061 Myoz2-201ENSMUST00000029761 1181 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 Rnf181-202ENSMUST00000069595 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 Iqcf1-201ENSMUST00000085114 613 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 Pigu-205ENSMUST00000165234 1626 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Col18a1P39061 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 Hmox1-201ENSMUST00000005548 1569 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC15.73■□□□□ 0.11
Col18a1P39061 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
Col18a1P39061 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Col18a1P39061 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 4933425D22Rik-201ENSMUST00000201035 1721 ntBASIC15.73■□□□□ 0.11
Col18a1P39061 4930484H19Rik-201ENSMUST00000218870 1737 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 AC154354.1-203ENSMUST00000225565 1364 ntBASIC15.73■□□□□ 0.11
Col18a1P39061 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC15.73■□□□□ 0.11
Col18a1P39061 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC15.73■□□□□ 0.11
Col18a1P39061 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col18a1P39061 Gm15625-201ENSMUST00000117617 1093 ntBASIC15.72■□□□□ 0.11
Col18a1P39061 1700008K24Rik-201ENSMUST00000185974 833 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col18a1P39061 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC15.72■□□□□ 0.11
Col18a1P39061 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC15.72■□□□□ 0.11
Col18a1P39061 Gm42660-201ENSMUST00000197733 947 ntBASIC15.72■□□□□ 0.11
Col18a1P39061 Gm43997-201ENSMUST00000203986 1005 ntBASIC15.72■□□□□ 0.11
Col18a1P39061 Gm45388-201ENSMUST00000209922 1132 ntTSL 5 BASIC15.72■□□□□ 0.11
Col18a1P39061 Tmod3-205ENSMUST00000215821 898 ntTSL 3 BASIC15.72■□□□□ 0.11
Col18a1P39061 CT025689.1-201ENSMUST00000225214 283 ntBASIC15.72■□□□□ 0.11
Col18a1P39061 AC102847.1-202ENSMUST00000226313 1245 ntBASIC15.72■□□□□ 0.11
Col18a1P39061 Olfr1395-201ENSMUST00000059379 954 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Col18a1P39061 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col18a1P39061 Il33-201ENSMUST00000025724 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col18a1P39061 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col18a1P39061 Brcc3-203ENSMUST00000118428 2093 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Col18a1P39061 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Col18a1P39061 Mphosph10-201ENSMUST00000032735 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col18a1P39061 Prss23os-202ENSMUST00000179361 1362 ntBASIC15.72■□□□□ 0.11
Col18a1P39061 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC15.72■□□□□ 0.11
Col18a1P39061 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col18a1P39061 Gm11993-201ENSMUST00000121861 820 ntBASIC15.72■□□□□ 0.11
Col18a1P39061 Mir6359-201ENSMUST00000183668 81 ntBASIC15.72■□□□□ 0.11
Col18a1P39061 Ccdc114-205ENSMUST00000211367 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col18a1P39061 Tpi-rs4-201ENSMUST00000213734 720 ntBASIC15.72■□□□□ 0.11
Col18a1P39061 Il18-203ENSMUST00000213916 885 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col18a1P39061 Olfr669-201ENSMUST00000098164 954 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Col18a1P39061 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col18a1P39061 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col18a1P39061 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col18a1P39061 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col18a1P39061 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Col18a1P39061 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Col18a1P39061 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col18a1P39061 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col18a1P39061 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
Col18a1P39061 Lgals4-201ENSMUST00000066723 1384 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col18a1P39061 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col18a1P39061 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col18a1P39061 Bckdk-202ENSMUST00000124533 1792 ntTSL 3 BASIC15.71■□□□□ 0.11
Col18a1P39061 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col18a1P39061 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.11
Col18a1P39061 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col18a1P39061 Pdzk1ip1-202ENSMUST00000106548 887 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col18a1P39061 Wfdc3-202ENSMUST00000109328 726 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col18a1P39061 Nup188-202ENSMUST00000113634 534 ntTSL 2 BASIC15.71■□□□□ 0.11
Col18a1P39061 Trub2-203ENSMUST00000113807 1035 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col18a1P39061 Gm14113-201ENSMUST00000121399 976 ntBASIC15.71■□□□□ 0.11
Col18a1P39061 Gm15412-201ENSMUST00000137193 1096 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col18a1P39061 Gm4868-201ENSMUST00000164138 789 ntBASIC15.71■□□□□ 0.11
Col18a1P39061 Gm23647-201ENSMUST00000175042 109 ntBASIC15.71■□□□□ 0.11
Col18a1P39061 Rn5s-201ENSMUST00000177555 119 ntBASIC15.71■□□□□ 0.11
Col18a1P39061 n-R5s108-201ENSMUST00000177575 119 ntBASIC15.71■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 58.5 ms