Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hmgb3O54879 Pcdh15-231ENSMUST00000177107 5696 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
Hmgb3O54879 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC10.08□□□□□ -0.8
Hmgb3O54879 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC10.07□□□□□ -0.8
Hmgb3O54879 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 1110002E22Rik-201ENSMUST00000163080 9741 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Hmgb3O54879 Gm8038-201ENSMUST00000164674 2044 ntBASIC10.07□□□□□ -0.8
Hmgb3O54879 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Mrpl45-201ENSMUST00000019026 2431 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Setd1b-201ENSMUST00000056053 7362 ntAPPRIS P2 TSL 5 BASIC10.07□□□□□ -0.8
Hmgb3O54879 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Gm37542-201ENSMUST00000192563 2832 ntBASIC10.07□□□□□ -0.8
Hmgb3O54879 Car10-206ENSMUST00000107863 3334 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Npas2-201ENSMUST00000056815 4236 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Ank1-205ENSMUST00000117296 6794 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC10.07□□□□□ -0.8
Hmgb3O54879 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Col9a1-202ENSMUST00000088349 3059 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC10.07□□□□□ -0.8
Hmgb3O54879 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC10.07□□□□□ -0.8
Hmgb3O54879 Gm16342-201ENSMUST00000124025 1025 ntBASIC10.07□□□□□ -0.8
Hmgb3O54879 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC10.07□□□□□ -0.8
Hmgb3O54879 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Gm28760-201ENSMUST00000185995 736 ntBASIC10.07□□□□□ -0.8
Hmgb3O54879 Gm29667-201ENSMUST00000190817 490 ntBASIC10.07□□□□□ -0.8
Hmgb3O54879 Ighv8-10-201ENSMUST00000199579 358 ntBASIC10.07□□□□□ -0.8
Hmgb3O54879 Gm44064-201ENSMUST00000204964 1087 ntBASIC10.07□□□□□ -0.8
Hmgb3O54879 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC10.07□□□□□ -0.8
Hmgb3O54879 AC126408.1-201ENSMUST00000225184 523 ntBASIC10.07□□□□□ -0.8
Hmgb3O54879 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Dnajb6-201ENSMUST00000008733 2918 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Tom1l2-203ENSMUST00000093048 4864 ntTSL 5 BASIC10.07□□□□□ -0.8
Hmgb3O54879 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Tfdp2-204ENSMUST00000179065 2213 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
Hmgb3O54879 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Tunar-201ENSMUST00000180458 3282 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC10.07□□□□□ -0.8
Hmgb3O54879 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Hmgb3O54879 Phka2-203ENSMUST00000112377 3947 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Hmgb3O54879 Has3-201ENSMUST00000034385 5912 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Hmgb3O54879 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Slc5a8-201ENSMUST00000020255 5331 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 4930488L21Rik-201ENSMUST00000181864 3244 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC10.07□□□□□ -0.8
Hmgb3O54879 Zfand2a-202ENSMUST00000110851 3121 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hmgb3O54879 Frmd4a-219ENSMUST00000177457 6538 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
Hmgb3O54879 Aldh1a7-201ENSMUST00000025656 2066 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Sh3tc2-201ENSMUST00000051720 4536 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
Hmgb3O54879 Arfgap1-201ENSMUST00000029092 2714 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
Hmgb3O54879 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Gm37849-201ENSMUST00000194722 1881 ntBASIC10.06□□□□□ -0.8
Hmgb3O54879 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Olfr804-202ENSMUST00000213331 5737 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
Hmgb3O54879 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Arap1-201ENSMUST00000084895 4404 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Erc2-201ENSMUST00000090302 6083 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
Hmgb3O54879 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC10.06□□□□□ -0.8
Hmgb3O54879 Gm13394-201ENSMUST00000121658 1000 ntBASIC10.06□□□□□ -0.8
Hmgb3O54879 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC10.06□□□□□ -0.8
Hmgb3O54879 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC10.06□□□□□ -0.8
Hmgb3O54879 Gm7730-201ENSMUST00000212486 454 ntBASIC10.06□□□□□ -0.8
Hmgb3O54879 AC166051.1-201ENSMUST00000214313 210 ntBASIC10.06□□□□□ -0.8
Hmgb3O54879 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC10.06□□□□□ -0.8
Hmgb3O54879 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC10.06□□□□□ -0.8
Hmgb3O54879 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Lsg1-201ENSMUST00000117363 3180 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Zfp41-204ENSMUST00000161785 3540 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 CT009713.10-201ENSMUST00000225013 1986 ntBASIC10.06□□□□□ -0.8
Hmgb3O54879 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 248.9 ms