Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Gm14208-201ENSMUST00000119645 678 ntBASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Gm45433-201ENSMUST00000209386 247 ntBASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cpsf3Q9QXK7 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Gm12164-201ENSMUST00000121695 551 ntBASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Gm24749-201ENSMUST00000157838 343 ntBASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Gm5616-201ENSMUST00000165252 384 ntBASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Gm8741-201ENSMUST00000174736 384 ntBASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Gstp-ps-201ENSMUST00000195526 631 ntBASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 CT485787.1-201ENSMUST00000225617 968 ntBASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Gm5053-201ENSMUST00000208361 1678 ntBASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Gm37131-201ENSMUST00000192502 1561 ntBASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 AC123619.2-202ENSMUST00000225097 1568 ntBASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cpsf3Q9QXK7 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cpsf3Q9QXK7 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Cpsf3Q9QXK7 Gm43677-201ENSMUST00000198098 2378 ntBASIC13.1□□□□□ -0.31
Cpsf3Q9QXK7 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
Cpsf3Q9QXK7 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC13.1□□□□□ -0.31
Cpsf3Q9QXK7 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cpsf3Q9QXK7 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Cpsf3Q9QXK7 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cpsf3Q9QXK7 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Cpsf3Q9QXK7 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Cpsf3Q9QXK7 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cpsf3Q9QXK7 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC13.1□□□□□ -0.31
Cpsf3Q9QXK7 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cpsf3Q9QXK7 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cpsf3Q9QXK7 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC13.1□□□□□ -0.31
Cpsf3Q9QXK7 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cpsf3Q9QXK7 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cpsf3Q9QXK7 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cpsf3Q9QXK7 Gm11439-201ENSMUST00000118598 409 ntBASIC13.1□□□□□ -0.31
Cpsf3Q9QXK7 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC13.1□□□□□ -0.31
Cpsf3Q9QXK7 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC13.1□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms