Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Cd163l1-201ENSMUST00000084460 3454 ntAPPRIS P2 TSL 5 BASIC12.06□□□□□ -0.48
Lima1Q9ERG0 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Lima1Q9ERG0 Gm15703-201ENSMUST00000120250 880 ntBASIC12.06□□□□□ -0.48
Lima1Q9ERG0 Gm12363-201ENSMUST00000122250 668 ntBASIC12.06□□□□□ -0.48
Lima1Q9ERG0 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC12.06□□□□□ -0.48
Lima1Q9ERG0 Gm23363-201ENSMUST00000175024 79 ntBASIC12.06□□□□□ -0.48
Lima1Q9ERG0 Gm8602-201ENSMUST00000184045 607 ntBASIC12.06□□□□□ -0.48
Lima1Q9ERG0 Gm32025-201ENSMUST00000217960 307 ntBASIC12.06□□□□□ -0.48
Lima1Q9ERG0 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lima1Q9ERG0 Tpx2-201ENSMUST00000028969 3654 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lima1Q9ERG0 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Lima1Q9ERG0 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lima1Q9ERG0 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lima1Q9ERG0 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Lima1Q9ERG0 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lima1Q9ERG0 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lima1Q9ERG0 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lima1Q9ERG0 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lima1Q9ERG0 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC12.06□□□□□ -0.48
Lima1Q9ERG0 Ndc1-204ENSMUST00000139560 4584 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lima1Q9ERG0 Gm9361-201ENSMUST00000198695 1507 ntBASIC12.06□□□□□ -0.48
Lima1Q9ERG0 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lima1Q9ERG0 B930036N10Rik-202ENSMUST00000181170 3544 ntBASIC12.06□□□□□ -0.48
Lima1Q9ERG0 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC12.06□□□□□ -0.48
Lima1Q9ERG0 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Lima1Q9ERG0 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lima1Q9ERG0 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Vmn1r45-206ENSMUST00000227977 3297 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Gdpd5-208ENSMUST00000213887 2711 ntTSL 5 BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 E330021D16Rik-203ENSMUST00000204830 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 3830432H09Rik-202ENSMUST00000188909 2414 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Gm24231-201ENSMUST00000104315 133 ntBASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Gm27682-201ENSMUST00000183930 110 ntBASIC12.05□□□□□ -0.48
Lima1Q9ERG0 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Gm38230-201ENSMUST00000193572 1159 ntBASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Gm37748-201ENSMUST00000194379 1140 ntBASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Fut2-201ENSMUST00000069800 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Gm26615-201ENSMUST00000181522 3201 ntTSL 2 BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Mob4-205ENSMUST00000162364 2840 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Grin1-208ENSMUST00000114318 3920 ntTSL 5 BASIC12.05□□□□□ -0.48
Lima1Q9ERG0 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Uimc1-201ENSMUST00000026997 2931 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Cldn12-201ENSMUST00000060947 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Foxn4-201ENSMUST00000044790 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Gm44775-201ENSMUST00000207266 1456 ntBASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Gm5745-201ENSMUST00000183748 313 ntBASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Gm43818-201ENSMUST00000200605 466 ntBASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 AC165260.3-202ENSMUST00000224550 1031 ntBASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Gm10268-201ENSMUST00000085340 555 ntBASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Ints6l-207ENSMUST00000186445 3608 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Crkl-201ENSMUST00000006293 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Rbm4b-201ENSMUST00000036744 1783 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Sec22b-201ENSMUST00000029476 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Car10-206ENSMUST00000107863 3334 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Fam210b-201ENSMUST00000028995 3617 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lima1Q9ERG0 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 49.7 ms