Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Gm43172-201ENSMUST00000202139 2137 ntBASIC11.72□□□□□ -0.53
Lsm1Q8VC85 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Gm42913-201ENSMUST00000197936 1853 ntBASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Gm12846-201ENSMUST00000120431 1373 ntBASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Gm12058-201ENSMUST00000118614 437 ntBASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Gm14999-201ENSMUST00000121039 624 ntBASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Gm8908-201ENSMUST00000121633 1024 ntBASIC11.72□□□□□ -0.53
Lsm1Q8VC85 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Gm27023-201ENSMUST00000182372 285 ntBASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Gm27731-201ENSMUST00000185192 107 ntBASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Olfr177-202ENSMUST00000217377 2401 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Cog3-203ENSMUST00000227473 4197 ntBASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 A630075F10Rik-201ENSMUST00000180895 1913 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lsm1Q8VC85 9330182L06Rik-204ENSMUST00000134991 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Gm18983-201ENSMUST00000222884 2729 ntBASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Gm14660-201ENSMUST00000119809 575 ntBASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Gm13316-201ENSMUST00000140537 691 ntBASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Gm13570-201ENSMUST00000140763 309 ntBASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Gm37201-201ENSMUST00000191845 523 ntBASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 AC126253.1-201ENSMUST00000227974 824 ntBASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lsm1Q8VC85 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Lsm1Q8VC85 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Lsm1Q8VC85 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Lsm1Q8VC85 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Lsm1Q8VC85 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Lsm1Q8VC85 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Lsm1Q8VC85 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Lsm1Q8VC85 Bpnt1-201ENSMUST00000027916 2200 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Lsm1Q8VC85 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Lsm1Q8VC85 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Lsm1Q8VC85 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Lsm1Q8VC85 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Lsm1Q8VC85 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC11.71□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms