Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Ndufs5-203ENSMUST00000106207 680 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Gm44551-201ENSMUST00000208804 171 ntBASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Ndufs5-201ENSMUST00000030401 525 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Gm43807-201ENSMUST00000200678 1781 ntBASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Gm43364-201ENSMUST00000196046 3274 ntBASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Platr7-201ENSMUST00000181466 1334 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Gm9387-201ENSMUST00000098624 1320 ntBASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Usp40Q8BWR4 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Usp40Q8BWR4 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Usp40Q8BWR4 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Usp40Q8BWR4 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Usp40Q8BWR4 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC16.68■□□□□ 0.26
Usp40Q8BWR4 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Usp40Q8BWR4 Gm15610-201ENSMUST00000120584 195 ntBASIC16.68■□□□□ 0.26
Usp40Q8BWR4 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC16.68■□□□□ 0.26
Usp40Q8BWR4 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC16.68■□□□□ 0.26
Usp40Q8BWR4 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC16.68■□□□□ 0.26
Usp40Q8BWR4 Pgam2-201ENSMUST00000020768 840 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Usp40Q8BWR4 Gm17931-201ENSMUST00000208132 634 ntBASIC16.68■□□□□ 0.26
Usp40Q8BWR4 AC113082.1-201ENSMUST00000217324 327 ntBASIC16.68■□□□□ 0.26
Usp40Q8BWR4 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC16.68■□□□□ 0.26
Usp40Q8BWR4 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Usp40Q8BWR4 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Usp40Q8BWR4 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Usp40Q8BWR4 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Usp40Q8BWR4 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Usp40Q8BWR4 F10-205ENSMUST00000152034 1449 ntTSL 5 BASIC16.68■□□□□ 0.26
Usp40Q8BWR4 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Usp40Q8BWR4 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Usp40Q8BWR4 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Usp40Q8BWR4 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC16.68■□□□□ 0.26
Usp40Q8BWR4 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Usp40Q8BWR4 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Usp40Q8BWR4 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Usp40Q8BWR4 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Gm37348-201ENSMUST00000193104 1789 ntBASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Gm12029-201ENSMUST00000120073 832 ntBASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Gm13263-201ENSMUST00000121271 838 ntBASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Gm15881-201ENSMUST00000148792 942 ntBASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Gm22144-201ENSMUST00000157402 102 ntBASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Gm13910-201ENSMUST00000121752 1428 ntBASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC16.67■□□□□ 0.26
Usp40Q8BWR4 Gm44758-201ENSMUST00000206096 2068 ntBASIC16.66■□□□□ 0.26
Usp40Q8BWR4 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp40Q8BWR4 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC16.66■□□□□ 0.26
Usp40Q8BWR4 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Usp40Q8BWR4 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Usp40Q8BWR4 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp40Q8BWR4 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp40Q8BWR4 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Usp40Q8BWR4 Gm11956-201ENSMUST00000119525 512 ntBASIC16.66■□□□□ 0.26
Usp40Q8BWR4 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC16.66■□□□□ 0.26
Usp40Q8BWR4 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC16.66■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms