Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Limch1Q3UH68 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Limch1Q3UH68 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Limch1Q3UH68 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Gm19891-201ENSMUST00000189771 303 ntBASIC14.38□□□□□ -0.11
Limch1Q3UH68 Gm44958-201ENSMUST00000203734 736 ntBASIC14.38□□□□□ -0.11
Limch1Q3UH68 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC14.38□□□□□ -0.11
Limch1Q3UH68 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Gm39404-201ENSMUST00000216350 313 ntBASIC14.38□□□□□ -0.11
Limch1Q3UH68 AC153974.2-201ENSMUST00000218577 1025 ntBASIC14.38□□□□□ -0.11
Limch1Q3UH68 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Limch1Q3UH68 AC123857.2-201ENSMUST00000225756 1582 ntBASIC14.38□□□□□ -0.11
Limch1Q3UH68 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Gm19817-201ENSMUST00000199764 2132 ntBASIC14.38□□□□□ -0.11
Limch1Q3UH68 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Limch1Q3UH68 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Limch1Q3UH68 AC156031.2-201ENSMUST00000213107 3310 ntBASIC14.37□□□□□ -0.11
Limch1Q3UH68 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Limch1Q3UH68 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Gm11930-201ENSMUST00000117788 190 ntBASIC14.37□□□□□ -0.11
Limch1Q3UH68 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Gm5597-201ENSMUST00000182353 1193 ntBASIC14.37□□□□□ -0.11
Limch1Q3UH68 Gm9678-201ENSMUST00000198979 1149 ntBASIC14.37□□□□□ -0.11
Limch1Q3UH68 AC073947.1-201ENSMUST00000216991 649 ntBASIC14.37□□□□□ -0.11
Limch1Q3UH68 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
Limch1Q3UH68 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Limch1Q3UH68 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Limch1Q3UH68 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Limch1Q3UH68 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
Limch1Q3UH68 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Limch1Q3UH68 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Limch1Q3UH68 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Limch1Q3UH68 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
Limch1Q3UH68 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Limch1Q3UH68 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Limch1Q3UH68 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Limch1Q3UH68 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Limch1Q3UH68 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Limch1Q3UH68 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC14.36□□□□□ -0.11
Limch1Q3UH68 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Limch1Q3UH68 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Limch1Q3UH68 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Limch1Q3UH68 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Limch1Q3UH68 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Limch1Q3UH68 Gm14130-201ENSMUST00000118417 987 ntBASIC14.36□□□□□ -0.11
Limch1Q3UH68 Gm11439-201ENSMUST00000118598 409 ntBASIC14.36□□□□□ -0.11
Limch1Q3UH68 Gm12058-201ENSMUST00000118614 437 ntBASIC14.36□□□□□ -0.11
Limch1Q3UH68 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC14.36□□□□□ -0.11
Limch1Q3UH68 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Limch1Q3UH68 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
Limch1Q3UH68 Gm27341-201ENSMUST00000183570 106 ntBASIC14.36□□□□□ -0.11
Limch1Q3UH68 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Limch1Q3UH68 Gm4034-201ENSMUST00000187674 480 ntBASIC14.36□□□□□ -0.11
Limch1Q3UH68 AA914427-201ENSMUST00000193194 1166 ntBASIC14.36□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms