Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cux1P53564 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cux1P53564 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cux1P53564 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cux1P53564 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cux1P53564 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC18.47■□□□□ 0.55
Cux1P53564 AC164702.1-201ENSMUST00000220135 2212 ntBASIC18.47■□□□□ 0.55
Cux1P53564 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC18.47■□□□□ 0.55
Cux1P53564 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC18.47■□□□□ 0.55
Cux1P53564 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC18.47■□□□□ 0.55
Cux1P53564 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC18.47■□□□□ 0.55
Cux1P53564 Cfap161-201ENSMUST00000011298 1335 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cux1P53564 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cux1P53564 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Cux1P53564 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Cux1P53564 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cux1P53564 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
Cux1P53564 Ighv7-2-201ENSMUST00000103462 354 ntAPPRIS ALT2 BASIC18.47■□□□□ 0.55
Cux1P53564 Rps10-202ENSMUST00000114881 604 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
Cux1P53564 Gm13791-201ENSMUST00000123263 608 ntTSL 3 BASIC18.47■□□□□ 0.55
Cux1P53564 Gm43852-201ENSMUST00000202098 917 ntBASIC18.47■□□□□ 0.55
Cux1P53564 Gm18561-201ENSMUST00000206027 804 ntBASIC18.47■□□□□ 0.55
Cux1P53564 CT009546.1-201ENSMUST00000222573 1120 ntBASIC18.47■□□□□ 0.55
Cux1P53564 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Cux1P53564 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cux1P53564 AC130823.1-201ENSMUST00000228929 1549 ntBASIC18.47■□□□□ 0.55
Cux1P53564 Ccdc60-202ENSMUST00000086483 2168 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Cux1P53564 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cux1P53564 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cux1P53564 AC154747.3-201ENSMUST00000224471 3470 ntBASIC18.47■□□□□ 0.55
Cux1P53564 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cux1P53564 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cux1P53564 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC18.46■□□□□ 0.55
Cux1P53564 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC18.46■□□□□ 0.55
Cux1P53564 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 Srsf5-201ENSMUST00000094693 1527 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 Gm38385-201ENSMUST00000194454 2351 ntBASIC18.46■□□□□ 0.55
Cux1P53564 Gm12969-201ENSMUST00000120199 1004 ntBASIC18.46■□□□□ 0.55
Cux1P53564 Gm24398-201ENSMUST00000157870 109 ntBASIC18.46■□□□□ 0.55
Cux1P53564 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Cux1P53564 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC18.46■□□□□ 0.55
Cux1P53564 Gm45592-201ENSMUST00000209605 1043 ntBASIC18.46■□□□□ 0.55
Cux1P53564 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 Hars2-206ENSMUST00000152954 3336 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Cux1P53564 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 Gm37644-201ENSMUST00000192190 2270 ntBASIC18.46■□□□□ 0.55
Cux1P53564 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cux1P53564 Ndufaf1-203ENSMUST00000110802 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
Cux1P53564 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Cux1P53564 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Cux1P53564 Gm18642-201ENSMUST00000206642 1400 ntBASIC18.45■□□□□ 0.54
Cux1P53564 Arl6ip5-201ENSMUST00000044681 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cux1P53564 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC18.45■□□□□ 0.54
Cux1P53564 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC18.45■□□□□ 0.54
Cux1P53564 Ighv5-9-201ENSMUST00000103448 418 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Cux1P53564 Gm11801-201ENSMUST00000117807 746 ntBASIC18.45■□□□□ 0.54
Cux1P53564 Gm15615-201ENSMUST00000118876 198 ntBASIC18.45■□□□□ 0.54
Cux1P53564 Tbata-203ENSMUST00000121297 1000 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Cux1P53564 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC18.45■□□□□ 0.54
Cux1P53564 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC18.45■□□□□ 0.54
Cux1P53564 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC18.45■□□□□ 0.54
Cux1P53564 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Cux1P53564 Mir8093-201ENSMUST00000185043 137 ntBASIC18.45■□□□□ 0.54
Cux1P53564 Gm9111-201ENSMUST00000219394 709 ntBASIC18.45■□□□□ 0.54
Cux1P53564 AC122346.3-201ENSMUST00000223983 306 ntBASIC18.45■□□□□ 0.54
Cux1P53564 Nmi-201ENSMUST00000028314 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cux1P53564 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cux1P53564 Mnd1-201ENSMUST00000047368 875 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cux1P53564 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Cux1P53564 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cux1P53564 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cux1P53564 Gm42748-201ENSMUST00000199354 2341 ntBASIC18.45■□□□□ 0.54
Cux1P53564 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Cux1P53564 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cux1P53564 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Cux1P53564 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cux1P53564 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Cux1P53564 Gm27196-201ENSMUST00000184787 2582 ntBASIC18.45■□□□□ 0.54
Cux1P53564 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC18.45■□□□□ 0.54
Cux1P53564 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cux1P53564 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms