Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Pamr1-201ENSMUST00000028612 2864 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC12.82□□□□□ -0.36
Usp4P35123 Dnajb6-201ENSMUST00000008733 2918 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC12.81□□□□□ -0.36
Usp4P35123 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC12.81□□□□□ -0.36
Usp4P35123 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Pitpnb-204ENSMUST00000200298 2632 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Mrpl45-201ENSMUST00000019026 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Usp4P35123 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC12.81□□□□□ -0.36
Usp4P35123 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC12.81□□□□□ -0.36
Usp4P35123 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC12.81□□□□□ -0.36
Usp4P35123 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
Usp4P35123 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC12.81□□□□□ -0.36
Usp4P35123 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
Usp4P35123 CT009713.10-202ENSMUST00000225734 696 ntBASIC12.81□□□□□ -0.36
Usp4P35123 AC140406.1-201ENSMUST00000226481 465 ntBASIC12.81□□□□□ -0.36
Usp4P35123 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 A430028G04Rik-201ENSMUST00000219095 1973 ntBASIC12.81□□□□□ -0.36
Usp4P35123 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Stxbp5l-201ENSMUST00000023526 3344 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC12.81□□□□□ -0.36
Usp4P35123 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp4P35123 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Usp4P35123 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Usp4P35123 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Gm45650-201ENSMUST00000211162 2169 ntTSL 5 BASIC12.8□□□□□ -0.36
Usp4P35123 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC12.8□□□□□ -0.36
Usp4P35123 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC12.8□□□□□ -0.36
Usp4P35123 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Gm37042-201ENSMUST00000193816 581 ntBASIC12.8□□□□□ -0.36
Usp4P35123 Gm44364-201ENSMUST00000198368 141 ntBASIC12.8□□□□□ -0.36
Usp4P35123 Gm19309-201ENSMUST00000218295 205 ntBASIC12.8□□□□□ -0.36
Usp4P35123 AC133598.1-201ENSMUST00000224327 660 ntBASIC12.8□□□□□ -0.36
Usp4P35123 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Gm9823-201ENSMUST00000051212 327 ntBASIC12.8□□□□□ -0.36
Usp4P35123 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
Usp4P35123 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Usp4P35123 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Usp4P35123 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC12.8□□□□□ -0.36
Usp4P35123 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp4P35123 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC12.79□□□□□ -0.36
Usp4P35123 Gm26615-201ENSMUST00000181522 3201 ntTSL 2 BASIC12.79□□□□□ -0.36
Usp4P35123 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC12.79□□□□□ -0.36
Usp4P35123 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Daxx-207ENSMUST00000174146 2424 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Usp4P35123 Mob4-205ENSMUST00000162364 2840 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms