Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Vps54-201ENSMUST00000006221 4323 ntAPPRIS P3 TSL 1 (best) BASIC9.98□□□□□ -0.81
Sdc1P18828 Rasal2-204ENSMUST00000132699 4013 ntAPPRIS ALT2 TSL 5 BASIC9.98□□□□□ -0.81
Sdc1P18828 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC9.98□□□□□ -0.81
Sdc1P18828 Myh2-201ENSMUST00000018641 6018 ntAPPRIS P1 TSL 5 BASIC9.98□□□□□ -0.81
Sdc1P18828 H2-T24-201ENSMUST00000113760 2182 ntAPPRIS P1 TSL 2 BASIC9.98□□□□□ -0.81
Sdc1P18828 Ptpru-202ENSMUST00000097860 3365 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Sdc1P18828 Dzip1l-202ENSMUST00000112884 3791 ntAPPRIS ALT2 TSL 5 BASIC9.98□□□□□ -0.81
Sdc1P18828 Txlna-201ENSMUST00000046425 4569 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Sdc1P18828 Rai2-201ENSMUST00000061514 2204 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Sdc1P18828 Gcnt7-201ENSMUST00000099060 2220 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Sdc1P18828 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Sdc1P18828 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC9.98□□□□□ -0.81
Sdc1P18828 Gm44207-201ENSMUST00000204568 1424 ntBASIC9.98□□□□□ -0.81
Sdc1P18828 Gm19299-202ENSMUST00000215724 1435 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Sdc1P18828 Rnf20-210ENSMUST00000167496 4312 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Sdc1P18828 Igf1-201ENSMUST00000062862 2292 ntTSL 2 BASIC9.98□□□□□ -0.81
Sdc1P18828 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC9.98□□□□□ -0.81
Sdc1P18828 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Sdc1P18828 Zscan12-203ENSMUST00000225545 4405 ntAPPRIS P1 BASIC9.98□□□□□ -0.81
Sdc1P18828 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Sdc1P18828 Zfp687-201ENSMUST00000019482 4632 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Wt1os-203ENSMUST00000172701 2960 ntTSL 2 BASIC9.97□□□□□ -0.81
Sdc1P18828 Gm44415-201ENSMUST00000204151 2112 ntBASIC9.97□□□□□ -0.81
Sdc1P18828 Tmc7-201ENSMUST00000044195 4546 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Plekha6-204ENSMUST00000187285 5040 ntAPPRIS ALT2 TSL 5 BASIC9.97□□□□□ -0.81
Sdc1P18828 AC093022.4-203ENSMUST00000228523 2657 ntBASIC9.97□□□□□ -0.81
Sdc1P18828 Myh8-201ENSMUST00000019625 6149 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Pcdhga10-201ENSMUST00000193404 4732 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Tmc5-202ENSMUST00000098088 3774 ntAPPRIS ALT2 TSL 5 BASIC9.97□□□□□ -0.81
Sdc1P18828 Gm26642-201ENSMUST00000180981 2782 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC9.97□□□□□ -0.81
Sdc1P18828 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC9.97□□□□□ -0.81
Sdc1P18828 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC9.97□□□□□ -0.81
Sdc1P18828 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC9.97□□□□□ -0.81
Sdc1P18828 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Gm19078-201ENSMUST00000206311 727 ntBASIC9.97□□□□□ -0.81
Sdc1P18828 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Vmn2r-ps25-201ENSMUST00000202322 2321 ntBASIC9.97□□□□□ -0.81
Sdc1P18828 Tapbpl-201ENSMUST00000043422 2352 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC9.97□□□□□ -0.81
Sdc1P18828 Scn10a-202ENSMUST00000213392 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Spag16-202ENSMUST00000113940 3559 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC9.97□□□□□ -0.81
Sdc1P18828 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC9.97□□□□□ -0.81
Sdc1P18828 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Htr1b-202ENSMUST00000183482 4724 ntAPPRIS P1 TSL 3 BASIC9.97□□□□□ -0.81
Sdc1P18828 Smarca2-209ENSMUST00000176030 5862 ntAPPRIS ALT2 TSL 5 BASIC9.97□□□□□ -0.81
Sdc1P18828 Gm13135-201ENSMUST00000117628 3121 ntBASIC9.97□□□□□ -0.81
Sdc1P18828 Tmem134-216ENSMUST00000171743 3701 ntTSL 5 BASIC9.97□□□□□ -0.81
Sdc1P18828 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Col20a1-201ENSMUST00000108856 4489 ntAPPRIS ALT2 TSL 5 BASIC9.97□□□□□ -0.81
Sdc1P18828 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Triobp-204ENSMUST00000109690 7023 ntAPPRIS P4 TSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Rgs12-203ENSMUST00000114280 2777 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Prss57-203ENSMUST00000169684 2841 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Sdc1P18828 Gm6560-201ENSMUST00000198588 1591 ntBASIC9.97□□□□□ -0.81
Sdc1P18828 Cd2bp2-207ENSMUST00000206026 2906 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
Sdc1P18828 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
Sdc1P18828 Fut8-203ENSMUST00000177595 2980 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
Sdc1P18828 Map3k12-208ENSMUST00000171565 4318 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
Sdc1P18828 Dgkh-202ENSMUST00000226342 15261 ntAPPRIS P1 BASIC9.96□□□□□ -0.81
Sdc1P18828 Clcn4-201ENSMUST00000000619 4607 ntAPPRIS P3 TSL 1 (best) BASIC9.96□□□□□ -0.81
Sdc1P18828 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC9.96□□□□□ -0.81
Sdc1P18828 Zfp608-201ENSMUST00000064763 6112 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
Sdc1P18828 Nsd3-210ENSMUST00000153597 1865 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
Sdc1P18828 Ddx54-201ENSMUST00000031598 4322 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
Sdc1P18828 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC9.96□□□□□ -0.82
Sdc1P18828 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC9.96□□□□□ -0.82
Sdc1P18828 Gm14350-201ENSMUST00000116642 640 ntBASIC9.96□□□□□ -0.82
Sdc1P18828 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
Sdc1P18828 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC9.96□□□□□ -0.82
Sdc1P18828 Gm25144-201ENSMUST00000179561 110 ntBASIC9.96□□□□□ -0.82
Sdc1P18828 Gm25352-201ENSMUST00000179815 110 ntBASIC9.96□□□□□ -0.82
Sdc1P18828 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC9.96□□□□□ -0.82
Sdc1P18828 Gm2762-206ENSMUST00000202502 335 ntTSL 3 BASIC9.96□□□□□ -0.82
Sdc1P18828 Gm2762-208ENSMUST00000202976 568 ntTSL 3 BASIC9.96□□□□□ -0.82
Sdc1P18828 Gm44069-201ENSMUST00000204898 506 ntBASIC9.96□□□□□ -0.82
Sdc1P18828 Gm7390-201ENSMUST00000212452 1216 ntBASIC9.96□□□□□ -0.82
Sdc1P18828 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC9.96□□□□□ -0.82
Sdc1P18828 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC9.96□□□□□ -0.82
Sdc1P18828 Gm5779-201ENSMUST00000218467 910 ntBASIC9.96□□□□□ -0.82
Sdc1P18828 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC9.96□□□□□ -0.82
Sdc1P18828 Erbin-201ENSMUST00000022222 6369 ntAPPRIS ALT2 TSL 5 BASIC9.96□□□□□ -0.82
Sdc1P18828 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC9.96□□□□□ -0.82
Sdc1P18828 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC9.96□□□□□ -0.82
Sdc1P18828 Bpifa1-201ENSMUST00000028985 1106 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
Sdc1P18828 Slc45a4-201ENSMUST00000054266 4664 ntAPPRIS ALT2 TSL 5 BASIC9.96□□□□□ -0.82
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms