Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Msx1P13297 Gm26361-201ENSMUST00000158868 186 ntBASIC11.8□□□□□ -0.52
Msx1P13297 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Prl3c1-203ENSMUST00000178072 579 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Msx1P13297 Gm5597-201ENSMUST00000182353 1193 ntBASIC11.8□□□□□ -0.52
Msx1P13297 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC11.8□□□□□ -0.52
Msx1P13297 Eloc-206ENSMUST00000186948 641 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
Msx1P13297 Gm28701-201ENSMUST00000189778 1010 ntTSL 5 BASIC11.8□□□□□ -0.52
Msx1P13297 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC11.8□□□□□ -0.52
Msx1P13297 Olfr206-202ENSMUST00000207927 1122 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Msx1P13297 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC11.8□□□□□ -0.52
Msx1P13297 Gm5904-201ENSMUST00000210286 865 ntBASIC11.8□□□□□ -0.52
Msx1P13297 Gm45587-201ENSMUST00000211548 765 ntTSL 5 BASIC11.8□□□□□ -0.52
Msx1P13297 Gm5950-201ENSMUST00000213337 772 ntBASIC11.8□□□□□ -0.52
Msx1P13297 AC154680.1-201ENSMUST00000224376 859 ntBASIC11.8□□□□□ -0.52
Msx1P13297 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC11.8□□□□□ -0.52
Msx1P13297 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Gm904-201ENSMUST00000099519 649 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC11.8□□□□□ -0.52
Msx1P13297 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 AC154262.2-202ENSMUST00000225158 1331 ntBASIC11.8□□□□□ -0.52
Msx1P13297 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Msx1P13297 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC11.8□□□□□ -0.52
Msx1P13297 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Gm27194-201ENSMUST00000175753 2936 ntBASIC11.8□□□□□ -0.52
Msx1P13297 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Msx1P13297 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC11.79□□□□□ -0.52
Msx1P13297 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Msx1P13297 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
Msx1P13297 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC11.79□□□□□ -0.52
Msx1P13297 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC11.79□□□□□ -0.52
Msx1P13297 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 Gm9083-201ENSMUST00000120423 819 ntBASIC11.79□□□□□ -0.52
Msx1P13297 Gm14739-201ENSMUST00000120424 802 ntBASIC11.79□□□□□ -0.52
Msx1P13297 Gm15225-201ENSMUST00000120449 1017 ntBASIC11.79□□□□□ -0.52
Msx1P13297 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC11.79□□□□□ -0.52
Msx1P13297 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC11.79□□□□□ -0.52
Msx1P13297 Gm15929-201ENSMUST00000138926 1161 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 Gm14040-201ENSMUST00000139058 697 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
Msx1P13297 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
Msx1P13297 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC11.79□□□□□ -0.52
Msx1P13297 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Msx1P13297 Gm18352-201ENSMUST00000189113 902 ntBASIC11.79□□□□□ -0.52
Msx1P13297 Gm37213-201ENSMUST00000193077 586 ntBASIC11.79□□□□□ -0.52
Msx1P13297 AC113082.2-201ENSMUST00000215876 756 ntTSL 3 BASIC11.79□□□□□ -0.52
Msx1P13297 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC11.79□□□□□ -0.52
Msx1P13297 AC160061.1-201ENSMUST00000217766 533 ntTSL 3 BASIC11.79□□□□□ -0.52
Msx1P13297 AC161537.1-201ENSMUST00000226199 1015 ntBASIC11.79□□□□□ -0.52
Msx1P13297 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 Fam92b-201ENSMUST00000048786 1187 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Msx1P13297 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC11.79□□□□□ -0.52
Msx1P13297 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC11.79□□□□□ -0.52
Msx1P13297 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 Vrk1-204ENSMUST00000220629 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 Gm26616-202ENSMUST00000195676 3107 ntBASIC11.79□□□□□ -0.52
Msx1P13297 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC11.79□□□□□ -0.52
Msx1P13297 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Msx1P13297 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC11.79□□□□□ -0.52
Msx1P13297 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Msx1P13297 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Gm44775-201ENSMUST00000207266 1456 ntBASIC11.78□□□□□ -0.52
Msx1P13297 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Msx1P13297 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
Msx1P13297 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC11.78□□□□□ -0.52
Msx1P13297 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msx1P13297 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 116.9 ms