Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC9.7□□□□□ -0.86
Hoxd3P09027 Gm40377-201ENSMUST00000204604 2015 ntBASIC9.7□□□□□ -0.86
Hoxd3P09027 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Nynrin-201ENSMUST00000100529 6990 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Gm44851-201ENSMUST00000205735 2309 ntBASIC9.7□□□□□ -0.86
Hoxd3P09027 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC9.7□□□□□ -0.86
Hoxd3P09027 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Gm12073-201ENSMUST00000117382 524 ntBASIC9.7□□□□□ -0.86
Hoxd3P09027 Gm11930-201ENSMUST00000117788 190 ntBASIC9.7□□□□□ -0.86
Hoxd3P09027 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC9.7□□□□□ -0.86
Hoxd3P09027 Gm14999-201ENSMUST00000121039 624 ntBASIC9.7□□□□□ -0.86
Hoxd3P09027 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Gm4819-201ENSMUST00000182170 1009 ntBASIC9.7□□□□□ -0.86
Hoxd3P09027 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Gm4959-201ENSMUST00000197271 1044 ntBASIC9.7□□□□□ -0.86
Hoxd3P09027 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC9.7□□□□□ -0.86
Hoxd3P09027 Gm44038-201ENSMUST00000203952 889 ntBASIC9.7□□□□□ -0.86
Hoxd3P09027 A530053G22Rik-204ENSMUST00000204579 536 ntTSL 2 BASIC9.7□□□□□ -0.86
Hoxd3P09027 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC9.7□□□□□ -0.86
Hoxd3P09027 AC093022.1-201ENSMUST00000226949 1072 ntBASIC9.7□□□□□ -0.86
Hoxd3P09027 Gngt1-201ENSMUST00000031673 1183 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Ranbp1-201ENSMUST00000052325 923 ntTSL 3 BASIC9.7□□□□□ -0.86
Hoxd3P09027 Olfr19-201ENSMUST00000057886 1142 ntAPPRIS P1 BASIC9.7□□□□□ -0.86
Hoxd3P09027 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC9.7□□□□□ -0.86
Hoxd3P09027 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Nexmif-203ENSMUST00000118314 11476 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Gm45643-201ENSMUST00000211364 1484 ntBASIC9.7□□□□□ -0.86
Hoxd3P09027 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC9.7□□□□□ -0.86
Hoxd3P09027 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC9.7□□□□□ -0.86
Hoxd3P09027 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hoxd3P09027 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC9.69□□□□□ -0.86
Hoxd3P09027 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC9.69□□□□□ -0.86
Hoxd3P09027 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC9.69□□□□□ -0.86
Hoxd3P09027 Gm14938-201ENSMUST00000119482 943 ntBASIC9.69□□□□□ -0.86
Hoxd3P09027 Gm13315-201ENSMUST00000120376 991 ntBASIC9.69□□□□□ -0.86
Hoxd3P09027 Gm12715-201ENSMUST00000121430 1128 ntBASIC9.69□□□□□ -0.86
Hoxd3P09027 Gm6027-201ENSMUST00000121467 756 ntBASIC9.69□□□□□ -0.86
Hoxd3P09027 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC9.69□□□□□ -0.86
Hoxd3P09027 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC9.69□□□□□ -0.86
Hoxd3P09027 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 Rmrp-201ENSMUST00000157463 271 ntBASIC9.69□□□□□ -0.86
Hoxd3P09027 Gm10176-201ENSMUST00000159707 2264 ntBASIC9.69□□□□□ -0.86
Hoxd3P09027 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC9.69□□□□□ -0.86
Hoxd3P09027 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC9.69□□□□□ -0.86
Hoxd3P09027 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC9.69□□□□□ -0.86
Hoxd3P09027 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 Vmn1r224-201ENSMUST00000170076 897 ntAPPRIS P1 BASIC9.69□□□□□ -0.86
Hoxd3P09027 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC9.69□□□□□ -0.86
Hoxd3P09027 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC9.69□□□□□ -0.86
Hoxd3P09027 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC9.69□□□□□ -0.86
Hoxd3P09027 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Hoxd3P09027 Gm27046-201ENSMUST00000182160 463 ntBASIC9.69□□□□□ -0.86
Hoxd3P09027 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC9.69□□□□□ -0.86
Hoxd3P09027 Gm3096-201ENSMUST00000185770 364 ntBASIC9.69□□□□□ -0.86
Hoxd3P09027 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC9.69□□□□□ -0.86
Retrieved 100 of 76,532 protein–RNA pairs in 57.2 ms