Protein–RNA interactions for Protein: E0CXC2

Gm28043, E3 ubiquitin-protein ligase RNF8, mousemouse

Predictions only

Length 719 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Gm28043E0CXC2 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Dopey2-207ENSMUST00000227156 7340 ntBASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Ptgfr-201ENSMUST00000029670 6624 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Aak1-201ENSMUST00000003710 7203 ntAPPRIS P3 TSL 5 BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Gm11425-201ENSMUST00000119608 498 ntBASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Mir1982-201ENSMUST00000157368 74 ntBASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Gm18916-201ENSMUST00000198264 1246 ntBASIC12.28□□□□□ -0.44
Gm28043E0CXC2 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Gm9396-201ENSMUST00000076703 567 ntBASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Kirrel2-201ENSMUST00000045817 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Clic4-201ENSMUST00000037099 4119 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Nedd9-202ENSMUST00000163623 4626 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Gm28043E0CXC2 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Gm28043E0CXC2 Gm15897-201ENSMUST00000117770 1486 ntBASIC12.27□□□□□ -0.44
Gm28043E0CXC2 Gm44775-201ENSMUST00000207266 1456 ntBASIC12.27□□□□□ -0.44
Gm28043E0CXC2 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Gm28043E0CXC2 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Gm28043E0CXC2 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC12.27□□□□□ -0.44
Gm28043E0CXC2 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Gm28043E0CXC2 Sel1l-204ENSMUST00000167466 5544 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Gm28043E0CXC2 Gm12940-202ENSMUST00000137236 1970 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Gm28043E0CXC2 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Gm28043E0CXC2 Gm43720-201ENSMUST00000159067 6411 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
Gm28043E0CXC2 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Gm28043E0CXC2 Dixdc1-203ENSMUST00000117646 5719 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Gm29050-201ENSMUST00000190732 2528 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Snora78-201ENSMUST00000158630 128 ntBASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Gm25927-201ENSMUST00000175058 117 ntBASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 AC022775.2-201ENSMUST00000227885 646 ntBASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Map1b-203ENSMUST00000223725 2669 ntBASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Gm37513-201ENSMUST00000194830 2268 ntBASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Gm38378-201ENSMUST00000195153 2268 ntBASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC12.27□□□□□ -0.45
Gm28043E0CXC2 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Gipr-201ENSMUST00000094790 2856 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Gm29100-201ENSMUST00000187564 4410 ntBASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Gm28043E0CXC2 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Gm28043E0CXC2 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Gm28043E0CXC2 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Gm28043E0CXC2 Ehbp1-202ENSMUST00000109563 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Gm28043E0CXC2 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Gm28043E0CXC2 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Gm28043E0CXC2 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Gm28043E0CXC2 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Gm28043E0CXC2 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Gm28043E0CXC2 Ciz1-204ENSMUST00000113334 2871 ntAPPRIS P3 TSL 5 BASIC12.26□□□□□ -0.45
Gm28043E0CXC2 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Gm28043E0CXC2 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Gm28043E0CXC2 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Gm28043E0CXC2 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms